Len_g04768

Description : subunit delta *(CCT4) of CCT chaperonin folding complex & original description: none

Gene families : OG0005270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005270_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g04768

Target	Alias	Description	ECC score	Gene Family Method
Als_g13529	No alias	subunit delta *(CCT4) of CCT chaperonin folding complex...	0.03	OrthoFinder output from all 47 species
Ceric.29G021200.1	Ceric.29G021200	subunit delta *(CCT4) of CCT chaperonin folding complex...	0.04	OrthoFinder output from all 47 species
Cre05.g234639	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.01	OrthoFinder output from all 47 species
GSVIVT01008363001	No alias	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.04	OrthoFinder output from all 47 species
LOC_Os02g22780.1	LOC_Os02g22780	CCT4 subunit delta of CCT chaperonin folding complex	0.02	OrthoFinder output from all 47 species
MA_18588g0010	No alias	CCT4 subunit delta of CCT chaperonin folding complex	0.03	OrthoFinder output from all 47 species
Pir_g04542	No alias	subunit delta *(CCT4) of CCT chaperonin folding complex...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016010	No alias	subunit delta *(CCT4) of CCT chaperonin folding complex...	0.04	OrthoFinder output from all 47 species
Spa_g12742	No alias	subunit delta *(CCT4) of CCT chaperonin folding complex...	0.02	OrthoFinder output from all 47 species
Tin_g00914	No alias	subunit delta *(CCT4) of CCT chaperonin folding complex...	0.02	OrthoFinder output from all 47 species
Zm00001e000128_P002	Zm00001e000128	CCT4 subunit delta of CCT chaperonin folding complex	0.03	OrthoFinder output from all 47 species
Zm00001e023455_P001	Zm00001e023455	CCT4 subunit delta of CCT chaperonin folding complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/GroEL/TCP-1	35	529

External Links

No external refs found!

Len_g04768

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation