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  5. Len_g04655

Len_g04655 (VAM3, ATVAM3,...)


Aliases : VAM3, ATVAM3, ATSYP22, SGR3, SYP22

Description : Qa-type SYP2-group component of SNARE membrane fusion complex & original description: none


Gene families : OG0001469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g04655
Cluster HCCA: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
Ceric.16G078800.1 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Ceric.31G009300.1 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
GSVIVT01024380001 SYP21, ATSYP21,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 21 120
IPR000727 T_SNARE_dom 210 262
No external refs found!