Len_g04120

Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g04120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00094950	UBQ6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.04	OrthoFinder output from all 47 species
AT2G47110	UBQ6	ubiquitin 6	0.03	OrthoFinder output from all 47 species
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.04	OrthoFinder output from all 47 species
AT3G62250	UBQ5	ubiquitin 5	0.04	OrthoFinder output from all 47 species
Adi_g052036	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g31081	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Als_g04717	RUB1, ATRUB1, NEDD8	RUB ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Als_g18351	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aob_g10329	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene54404.t1	UBQ11, Aspi01Gene54404	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54416.t1	UBQ11, Aspi01Gene54416	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54450.t1	Aspi01Gene54450	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.08G072700.1	Ceric.08G072700	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.50	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Dac_g08496	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g46245	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dde_g17886	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01033876001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Gb_28712	UBQ11	ubiquitin-fold protein (UBQ)	0.02	OrthoFinder output from all 47 species
LOC_Os05g06770.1	UBQ6, LOC_Os05g06770	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Len_g05009	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g17565	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g26766	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g27408	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
MA_10435699g0030	No alias	Ubiquitin-40S ribosomal protein S27a-1 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_13101g0020	No alias	component RPL40 of LSU proteome component	0.02	OrthoFinder output from all 47 species
MA_529552g0010	UBQ6	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Msp_g34986	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ore_g23785	RUB1, ATRUB1, NEDD8	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g02121	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c10_25270V3.1	Pp3c10_25270	ubiquitin extension protein 1	0.02	OrthoFinder output from all 47 species
Pp3c20_23170V3.1	Pp3c20_23170	ubiquitin extension protein 1	0.02	OrthoFinder output from all 47 species
Sam_g07359	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g07364	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Smo111605	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc01g068045.1.1	UBQ6, Solyc01g068045	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc03g082570.4.1	Solyc03g082570	component RPL40 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Solyc12g098940.2.1	UBQ6, Solyc12g098940	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g02055	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g29603	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g29979	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Tin_g22845	UBQ11	UBQ ubiquiTin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000965_P001	Zm00001e000965	component RPL40 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e003606_P001	UBQ6, Zm00001e003606	component RPS27a of SSU proteome	0.02	OrthoFinder output from all 47 species
Zm00001e009474_P001	Zm00001e009474	component RPL40 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e026237_P001	UBQ6, Zm00001e026237	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000808	origin recognition complex	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
CC	GO:0005664	nuclear origin of replication recognition complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	74
IPR001975	Ribosomal_L40e	78	127

External Links

No external refs found!

Len_g04120

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation