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  5. Len_g03878

Len_g03878 (AT-GT2, GT2)


Aliases : AT-GT2, GT2

Description : Trihelix-type transcription factor & original description: none


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g03878
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Als_g40404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene41238.t1 Aspi01Gene41238 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54632.t1 Aspi01Gene54632 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0305.g063935 AT-GT2, GT2 not classified & original description: CDS=293-1360 0.06 OrthoFinder output from all 47 species
Ceric.03G031000.1 Ceric.03G031000 Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g08044 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30439 No alias Trihelix-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os04g45750.1 LOC_Os04g45750 transcription factor (Trihelix) 0.05 OrthoFinder output from all 47 species
LOC_Os10g37240.4 LOC_Os10g37240 Trihelix transcription factor GT-2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp8g08100.1 No alias transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Ore_g33181 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023745 No alias Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g48438 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Smo85122 No alias Trihelix transcription factor GT-2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Zm00001e007383_P001 Zm00001e007383 transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 496 588
IPR044822 Myb_DNA-bind_4 178 260
No external refs found!