AT3G47070

Description : LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Gene families : OG_01_0009660 (Archaeplastida) Phylogenetic Tree(s): OG_01_0009660_tree ,
OG_02_0009682 (LandPlants) Phylogenetic Tree(s): OG_02_0009682_tree ,
OG_03_0005959 (SeedPlants) Phylogenetic Tree(s): OG_03_0005959_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G47070
Cluster	HCCA: Cluster_142

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00225070	evm_27.TU.AmTr_v1...	No description available	0.05	Archaeplastida
GSVIVT01024785001	No alias	No description available	0.12	Archaeplastida
LOC_Os03g61090.1	No alias	no hits & (original description: none)	0.09	Archaeplastida
LOC_Os07g13969.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_125282g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc06g076790.1.1	No alias	no hits & (original description: none)	0.13	Archaeplastida
Zm00001e006229_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e009577_P001	No alias	no hits & (original description: none)	0.15	Archaeplastida
AMTR_s00029p00225070	evm_27.TU.AmTr_v1...	No description available	0.05	LandPlants
GSVIVT01024785001	No alias	No description available	0.12	LandPlants
LOC_Os03g61090.1	No alias	no hits & (original description: none)	0.08	LandPlants
LOC_Os07g13969.1	No alias	no hits & (original description: none)	0.02	LandPlants
MA_125282g0010	No alias	no hits & (original description: none)	0.05	LandPlants
Solyc06g076790.1.1	No alias	no hits & (original description: none)	0.11	LandPlants
Zm00001e006229_P001	No alias	no hits & (original description: none)	0.06	LandPlants
Zm00001e009577_P001	No alias	no hits & (original description: none)	0.15	LandPlants
AMTR_s00029p00225070	evm_27.TU.AmTr_v1...	No description available	0.04	SeedPlants
GSVIVT01024785001	No alias	No description available	0.12	SeedPlants
Gb_19341	No alias	no hits & (original description: none)	0.06	SeedPlants
LOC_Os03g61090.1	No alias	no hits & (original description: none)	0.08	SeedPlants
LOC_Os07g13969.1	No alias	no hits & (original description: none)	0.02	SeedPlants
MA_125282g0010	No alias	no hits & (original description: none)	0.05	SeedPlants
MA_250413g0010	No alias	no hits & (original description: none)	0.05	SeedPlants
Solyc06g076790.1.1	No alias	no hits & (original description: none)	0.11	SeedPlants
Zm00001e006229_P001	No alias	no hits & (original description: none)	0.06	SeedPlants
Zm00001e009577_P001	No alias	no hits & (original description: none)	0.15	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006873	cellular ion homeostasis	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	ISS	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009637	response to blue light	RCA	Interproscan
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	None	Extended
BP	GO:0009668	plastid membrane organization	None	Extended
BP	GO:0009902	chloroplast relocation	RCA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010027	thylakoid membrane organization	RCA	Interproscan
BP	GO:0010114	response to red light	RCA	Interproscan
BP	GO:0010218	response to far red light	RCA	Interproscan
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0019750	chloroplast localization	None	Extended
BP	GO:0030003	cellular cation homeostasis	RCA	Interproscan
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	RCA	Interproscan
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050801	ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051644	plastid localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051656	establishment of organelle localization	None	Extended
BP	GO:0051667	establishment of plastid localization	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0055080	cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR021584	TSP9	21	100

External Links

No external refs found!

AT3G47070

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation