AT3G46780 (PTAC16)


Aliases : PTAC16

Description : plastid transcriptionally active 16


Gene families : OG_01_0008550 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008550_tree ,
OG_02_0008848 (LandPlants) Phylogenetic Tree(s): OG_02_0008848_tree ,
OG_03_0010031 (SeedPlants) Phylogenetic Tree(s): OG_03_0010031_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G46780
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00257120 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.25 Archaeplastida
GSVIVT01024905001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.2 Archaeplastida
Gb_02666 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.15 Archaeplastida
LOC_Os05g22614.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida
MA_806g0020 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.13 Archaeplastida
Mp8g16460.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.24 Archaeplastida
Pp3c1_14800V3.1 No alias plastid transcriptionally active 16 0.02 Archaeplastida
Solyc06g005710.3.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.34 Archaeplastida
Zm00001e026770_P002 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.16 Archaeplastida
AMTR_s00012p00257120 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.25 LandPlants
GSVIVT01024905001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.18 LandPlants
Gb_02666 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.15 LandPlants
LOC_Os05g22614.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.08 LandPlants
MA_806g0020 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.14 LandPlants
Mp8g16460.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.23 LandPlants
Pp3c1_14800V3.1 No alias plastid transcriptionally active 16 0.02 LandPlants
Solyc06g005710.3.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.33 LandPlants
Zm00001e026770_P002 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.16 LandPlants
AMTR_s00012p00257120 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.23 SeedPlants
GSVIVT01024905001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.18 SeedPlants
Gb_02666 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.15 SeedPlants
LOC_Os05g22614.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.08 SeedPlants
MA_806g0020 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.12 SeedPlants
Solyc06g005710.3.1 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.33 SeedPlants
Zm00001e026770_P002 No alias TAC16 cofactor of plastid-encoded RNA polymerase 0.15 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006098 pentose-phosphate shunt RCA Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0007623 circadian rhythm IEP Interproscan
CC GO:0009295 nucleoid IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009508 plastid chromosome IDA Interproscan
CC GO:0009534 chloroplast thylakoid IDA Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
BP GO:0009637 response to blue light RCA Interproscan
BP GO:0009902 chloroplast relocation RCA Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
BP GO:0010103 stomatal complex morphogenesis RCA Interproscan
BP GO:0010114 response to red light RCA Interproscan
BP GO:0010218 response to far red light RCA Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
BP GO:0015995 chlorophyll biosynthetic process RCA Interproscan
CC GO:0016020 membrane IDA Interproscan
BP GO:0016117 carotenoid biosynthetic process RCA Interproscan
BP GO:0019684 photosynthesis, light reaction RCA Interproscan
BP GO:0019761 glucosinolate biosynthetic process RCA Interproscan
BP GO:0034660 ncRNA metabolic process RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 98 310
No external refs found!