Len_g01923 (HVT1, ATVT-1)

Aliases : HVT1, ATVT-1

Description : not classified & original description: none

Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g01923

Target	Alias	Description	ECC score	Gene Family Method
AT1G06670	NIH	nuclear DEIH-boxhelicase	0.04	OrthoFinder output from all 47 species
Gb_13707	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os01g56190.1	HVT1, ATVT-1,...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_10434659g0010	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Ore_g26937	HVT1, ATVT-1	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g16610	HVT1, ATVT-1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007644	HVT1, ATVT-1	not classified & original description: CDS=76-3780	0.02	OrthoFinder output from all 47 species
Sam_g16176	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc07g044930.3.1	HVT1, ATVT-1,...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Spa_g10294	HVT1, ATVT-1	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	954	1046
IPR001650	Helicase_C	610	729
IPR001374	R3H_dom	84	139
IPR007502	Helicase-assoc_dom	794	870
IPR011545	DEAD/DEAH_box_helicase_dom	250	405

External Links

No external refs found!