Zm00001e041910_P003


Description : transcription factor (ARF)


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000516 (LandPlants) Phylogenetic Tree(s): OG_02_0000516_tree ,
OG_03_0000730 (SeedPlants) Phylogenetic Tree(s): OG_03_0000730_tree

Sequence : coding (download), protein (download)

No expression profile available


Type Description Actions
Neighborhood HRR: Zm00001e041910_P003
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00168950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
AMTR_s00155p00082980 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.07 Archaeplastida
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.03 Archaeplastida
AT2G46530 ARF11 auxin response factor 11 0.02 Archaeplastida
AT4G30080 ARF16 auxin response factor 16 0.02 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.05 Archaeplastida
GSVIVT01004942001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
GSVIVT01008950001 No alias Auxin response factor 17 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01019566001 No alias RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01025691001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01027166001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01032251001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01035204001 No alias RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
GSVIVT01035205001 No alias Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Gb_18738 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_31132 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_32864 No alias transcription factor (ARF) 0.02 Archaeplastida
Gb_39685 No alias transcription factor (ARF) 0.06 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os02g06910.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os02g35140.1 No alias transcription factor (ARF) 0.07 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.1 Archaeplastida
LOC_Os05g43920.1 No alias transcription factor (ARF) 0.06 Archaeplastida
LOC_Os05g48870.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os06g46410.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os06g48950.1 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os10g33940.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.07 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.09 Archaeplastida
MA_103763g0010 No alias Auxin response factor 6 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_10430707g0020 No alias transcription factor (ARF) 0.02 Archaeplastida
MA_10432528g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
MA_122218g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
MA_69854g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
MA_85955g0010 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp1g07070.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.07 Archaeplastida
Pp3c1_40270V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c26_11550V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c4_13010V3.1 No alias auxin response factor 16 0.02 Archaeplastida
Solyc01g103050.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc02g037530.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc05g047460.3.1 No alias transcription factor (ARF) 0.06 Archaeplastida
Solyc05g056040.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc06g075150.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc09g007810.4.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc12g042070.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e016366_P002 No alias transcription factor (ARF) 0.06 Archaeplastida
Zm00001e039552_P004 No alias transcription factor (ARF) 0.03 Archaeplastida
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.05 LandPlants
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.04 LandPlants
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.03 LandPlants
GSVIVT01035204001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 LandPlants
Gb_32864 No alias transcription factor (ARF) 0.02 LandPlants
Gb_39685 No alias transcription factor (ARF) 0.05 LandPlants
LOC_Os02g06910.1 No alias transcription factor (ARF) 0.02 LandPlants
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.02 LandPlants
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.1 LandPlants
LOC_Os06g46410.1 No alias transcription factor (ARF) 0.03 LandPlants
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.09 LandPlants
Mp1g12750.1 No alias transcription factor (ARF) 0.04 LandPlants
Pp3c13_4720V3.1 No alias auxin response factor 6 0.05 LandPlants
Pp3c1_40270V3.1 No alias auxin response factor 6 0.03 LandPlants
Pp3c26_11550V3.1 No alias auxin response factor 6 0.03 LandPlants
Solyc02g037530.3.1 No alias transcription factor (ARF) 0.02 LandPlants
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.05 SeedPlants
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.03 SeedPlants
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.01 SeedPlants
GSVIVT01035204001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 SeedPlants
Gb_32864 No alias transcription factor (ARF) 0.01 SeedPlants
Gb_39685 No alias transcription factor (ARF) 0.04 SeedPlants
LOC_Os02g06910.1 No alias transcription factor (ARF) 0.02 SeedPlants
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.02 SeedPlants
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.08 SeedPlants
LOC_Os06g46410.1 No alias transcription factor (ARF) 0.03 SeedPlants
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.07 SeedPlants
Solyc03g031970.4.1 No alias transcription factor (ARF) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 128 229
IPR010525 Auxin_resp 254 337
IPR033389 AUX/IAA_dom 704 795
No external refs found!