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  5. Len_g00493

Len_g00493


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g00493

Target Alias Description ECC score Gene Family Method Actions
AT1G32360 No alias Zinc finger (CCCH-type) family protein 0.02 OrthoFinder output from all 47 species
Adi_g018595 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Adi_g117729 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Als_g07736 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g23125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01754 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Cba_g76784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16771 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015500001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
Lfl_g22114 No alias regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Ore_g23447 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38302 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Pnu_g09759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025558 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Sam_g14380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35335 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Spa_g15252 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e040205_P001 Zm00001e040205 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051180 vitamin transport IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0090482 vitamin transmembrane transporter activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 201 221
IPR000571 Znf_CCCH 135 160
IPR000571 Znf_CCCH 257 282
No external refs found!