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  5. Len_g00426

Len_g00426 (ATPUB17, PUB17)


Aliases : ATPUB17, PUB17

Description : not classified & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g00426

Target Alias Description ECC score Gene Family Method Actions
Adi_g083407 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03476 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16654 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g009575 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=1132-3033 0.02 OrthoFinder output from all 47 species
Cba_g09348 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g36575 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g02331 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g16824.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os03g32100.1 LOC_Os03g32100 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_29517g0010 No alias U-box domain-containing protein 12 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Pnu_g00828 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Spa_g10462 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18762 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06505 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 276 306
IPR000225 Armadillo 102 139
IPR000225 Armadillo 227 266
No external refs found!