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  5. AT3G27750

AT3G27750


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0000732 (LandPlants) Phylogenetic Tree(s): OG_02_0000732_tree ,
OG_03_0001882 (SeedPlants) Phylogenetic Tree(s): OG_03_0001882_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G27750
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
MA_12518g0010 No alias Pentatricopeptide repeat-containing protein PPR5... 0.05 Archaeplastida
Smo432504 No alias No description available 0.04 Archaeplastida
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.04 Archaeplastida
Zm00001e025825_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 Archaeplastida
LOC_Os04g39970.1 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e025825_P001 No alias no hits & (original description: none) 0.03 LandPlants
AMTR_s00034p00130400 evm_27.TU.AmTr_v1... Protein THYLAKOID ASSEMBLY 8, chloroplastic... 0.02 SeedPlants
LOC_Os04g39970.1 No alias no hits & (original description: none) 0.03 SeedPlants
Zm00001e025825_P001 No alias no hits & (original description: none) 0.03 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000373 Group II intron splicing IMP Interproscan
MF GO:0003723 RNA binding IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0009658 chloroplast organization IMP Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!