AT3G25060


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000000 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_03_0000000 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G25060
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00094190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
Cpa|evm.model.tig00021312.67 No alias No description available 0.01 Archaeplastida
LOC_Os01g01115.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os01g08120.1 No alias RNA editing factor (OTP81) 0.05 Archaeplastida
LOC_Os01g55960.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.04 Archaeplastida
LOC_Os02g07050.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
LOC_Os03g13230.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 Archaeplastida
LOC_Os06g27790.1 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
LOC_Os07g05560.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.07 Archaeplastida
LOC_Os07g39910.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
LOC_Os08g25280.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
LOC_Os10g34720.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10429043g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_114565g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_16823g0010 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_57837g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
MA_724726g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_794605g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_8678g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_89214g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_9415113g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Smo103099 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Smo34484 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Smo79732 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.04 Archaeplastida
AMTR_s00109p00094190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 LandPlants
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.05 LandPlants
GSVIVT01017989001 No alias RNA processing.organelle machineries.RNA... 0.03 LandPlants
LOC_Os01g01115.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
LOC_Os01g08120.1 No alias RNA editing factor (OTP81) 0.04 LandPlants
LOC_Os03g13230.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 LandPlants
LOC_Os07g05560.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.06 LandPlants
LOC_Os08g25280.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 LandPlants
LOC_Os10g34720.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
MA_10429043g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 LandPlants
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 LandPlants
MA_131437g0010 No alias RNA editing factor (MEF3) 0.02 LandPlants
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 LandPlants
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 LandPlants
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 LandPlants
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 LandPlants
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 LandPlants
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 LandPlants
MA_724726g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 LandPlants
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 LandPlants
MA_794605g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 LandPlants
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 LandPlants
MA_89214g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 LandPlants
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 LandPlants
Zm00001e029819_P003 No alias RNA editing factor (CRR22) 0.03 LandPlants
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.03 LandPlants
AMTR_s00010p00246970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 SeedPlants
LOC_Os01g08120.1 No alias RNA editing factor (OTP81) 0.04 SeedPlants
LOC_Os07g05560.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.06 SeedPlants
LOC_Os08g25280.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 SeedPlants
LOC_Os10g40920.1 No alias RNA editing factor (MEF13) 0.02 SeedPlants
LOC_Os12g01850.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
MA_10429043g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.01 SeedPlants
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 SeedPlants
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_131437g0010 No alias RNA editing factor (MEF3) 0.02 SeedPlants
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 SeedPlants
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 SeedPlants
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.01 SeedPlants
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 SeedPlants
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 SeedPlants
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 SeedPlants
MA_794605g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 SeedPlants
MA_86628g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 SeedPlants
MA_89214g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 SeedPlants
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.01 SeedPlants
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 SeedPlants
Solyc07g008480.3.1 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.02 SeedPlants
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.02 SeedPlants
Zm00001e029819_P003 No alias RNA editing factor (CRR22) 0.03 SeedPlants
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.02 SeedPlants
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.03 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 314
IPR002885 Pentatricopeptide_repeat 457 478
IPR002885 Pentatricopeptide_repeat 256 279
IPR002885 Pentatricopeptide_repeat 184 213
IPR002885 Pentatricopeptide_repeat 153 181
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 80 126
No external refs found!