AT3G23900

Description : RNA recognition motif (RRM)-containing protein

Gene families : OG_01_0005632 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005632_tree ,
OG_02_0005910 (LandPlants) Phylogenetic Tree(s): OG_02_0005910_tree ,
OG_03_0006990 (SeedPlants) Phylogenetic Tree(s): OG_03_0006990_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G23900
Cluster	HCCA: Cluster_198

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01001478001	No alias	No description available	0.04	Archaeplastida
MA_71038g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp1g28520.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Pp3c24_4280V3.1	No alias	RNA recognition motif (RRM)-containing protein	0.05	Archaeplastida
Pp3c8_5960V3.1	No alias	RNA recognition motif (RRM)-containing protein	0.04	Archaeplastida
Solyc09g092250.3.1	No alias	no hits & (original description: none)	0.07	Archaeplastida
Zm00001e017191_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e025611_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
GSVIVT01001478001	No alias	No description available	0.02	LandPlants
MA_71038g0010	No alias	no hits & (original description: none)	0.02	LandPlants
Mp1g28520.1	No alias	no hits & (original description: none)	0.03	LandPlants
Pp3c24_4280V3.1	No alias	RNA recognition motif (RRM)-containing protein	0.04	LandPlants
Pp3c8_5960V3.1	No alias	RNA recognition motif (RRM)-containing protein	0.03	LandPlants
Solyc09g092250.3.1	No alias	no hits & (original description: none)	0.06	LandPlants
Zm00001e017191_P001	No alias	no hits & (original description: none)	0.03	LandPlants
Zm00001e025611_P001	No alias	no hits & (original description: none)	0.03	LandPlants
GSVIVT01001478001	No alias	No description available	0.02	SeedPlants
MA_71038g0010	No alias	no hits & (original description: none)	0.02	SeedPlants
Solyc09g092250.3.1	No alias	no hits & (original description: none)	0.05	SeedPlants
Zm00001e017191_P001	No alias	no hits & (original description: none)	0.03	SeedPlants
Zm00001e025611_P001	No alias	no hits & (original description: none)	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	RCA	Interproscan
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007155	cell adhesion	RCA	Interproscan
BP	GO:0008064	regulation of actin polymerization or depolymerization	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009887	animal organ morphogenesis	RCA	Interproscan
BP	GO:0009888	tissue development	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010638	positive regulation of organelle organization	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016926	protein desumoylation	RCA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022610	biological adhesion	None	Extended
BP	GO:0030832	regulation of actin filament length	None	Extended
BP	GO:0030833	regulation of actin filament polymerization	None	Extended
BP	GO:0030838	positive regulation of actin filament polymerization	None	Extended
BP	GO:0031334	positive regulation of protein-containing complex assembly	None	Extended
BP	GO:0032271	regulation of protein polymerization	None	Extended
BP	GO:0032273	positive regulation of protein polymerization	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032535	regulation of cellular component size	None	Extended
BP	GO:0032956	regulation of actin cytoskeleton organization	None	Extended
BP	GO:0032970	regulation of actin filament-based process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042743	hydrogen peroxide metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043254	regulation of protein-containing complex assembly	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044089	positive regulation of cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045010	actin nucleation	RCA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050665	hydrogen peroxide biosynthetic process	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051493	regulation of cytoskeleton organization	None	Extended
BP	GO:0051495	positive regulation of cytoskeleton organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0090066	regulation of anatomical structure size	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
BP	GO:0110053	regulation of actin filament organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902903	regulation of supramolecular fiber organization	None	Extended
BP	GO:1902905	positive regulation of supramolecular fiber organization	None	Extended
BP	GO:1903409	reactive oxygen species biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR017868	Filamin/ABP280_repeat-like	88	186
IPR000504	RRM_dom	355	415

External Links

No external refs found!

AT3G23900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation