Zm00001e026331_P001


Description : chromatin remodeling factor (Iswi)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0003200 (LandPlants) Phylogenetic Tree(s): OG_02_0003200_tree ,
OG_03_0004460 (SeedPlants) Phylogenetic Tree(s): OG_03_0004460_tree

Sequence : coding (download), protein (download)

No expression profile available


Type Description Actions
Neighborhood HRR: Zm00001e026331_P001
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AMTR_s00053p00098350 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.05 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.07 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.03 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.05 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.06 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.07 Archaeplastida
AT3G06400 CHR11 chromatin-remodeling protein 11 0.02 Archaeplastida
AT5G19310 No alias Homeotic gene regulator 0.02 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.04 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.01 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.01 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.07 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.09 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01017821001 No alias No description available 0.06 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.08 Archaeplastida
LOC_Os02g02050.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
MA_102992g0010 No alias Probable chromatin-remodeling complex ATPase chain... 0.02 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10436824g0010 No alias No annotation 0.02 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
Pp3c10_6710V3.1 No alias SNF2 domain-containing protein / helicase... 0.03 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.07 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.05 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.05 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.07 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.07 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.07 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.16 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
AT3G06400 CHR11 chromatin-remodeling protein 11 0.02 LandPlants
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.08 LandPlants
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.06 LandPlants
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.08 LandPlants
MA_102992g0010 No alias Probable chromatin-remodeling complex ATPase chain... 0.02 LandPlants
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 LandPlants
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.05 LandPlants
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.06 LandPlants
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.15 LandPlants
AT3G06400 CHR11 chromatin-remodeling protein 11 0.02 SeedPlants
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.08 SeedPlants
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.05 SeedPlants
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.08 SeedPlants
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.15 SeedPlants
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
MF GO:0031491 nucleosome binding IEA Interproscan
BP GO:0043044 ATP-dependent chromatin remodeling IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000330 SNF2_dom 239 506
IPR015195 SLIDE 930 1040
IPR015194 ISWI_HAND-dom 790 851
IPR001650 Helicase_C 529 641
No external refs found!