Zm00001e023825_P002


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0004419 (LandPlants) Phylogenetic Tree(s): OG_02_0004419_tree ,
OG_03_0002756 (SeedPlants) Phylogenetic Tree(s): OG_03_0002756_tree

Sequence : coding (download), protein (download)

No expression profile available


Type Description Actions
Neighborhood HRR: Zm00001e023825_P002
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00103080 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AT2G03710 AGL3, SEP4 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT2G14210 ANR1, AGL44 AGAMOUS-like 44 0.06 Archaeplastida
AT2G45660 SOC1, AGL20, ATSOC1 AGAMOUS-like 20 0.04 Archaeplastida
AT3G57390 AGL18 AGAMOUS-like 18 0.08 Archaeplastida
Gb_12778 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_30604 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Gb_38920 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
MA_45349g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_95674g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc10g017640.1.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e012026_P002 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e014926_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e015447_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e018811_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e029170_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 92 170
No external refs found!