AT3G16960


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT3G16970.1); Has 22 Blast hits to 22 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG_01_0007821 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007821_tree ,
OG_02_0006111 (LandPlants) Phylogenetic Tree(s): OG_02_0006111_tree ,
OG_03_0005063 (SeedPlants) Phylogenetic Tree(s): OG_03_0005063_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G16960
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT1G04645 No alias Plant self-incompatibility protein S1 family 0.07 Archaeplastida
AT3G17080 No alias Plant self-incompatibility protein S1 family 0.09 Archaeplastida
AT4G16195 No alias Plant self-incompatibility protein S1 family 0.11 Archaeplastida
AT4G24973 No alias Plant self-incompatibility protein S1 family 0.09 Archaeplastida
AT4G24974 No alias Plant self-incompatibility protein S1 family 0.12 Archaeplastida
AT4G24975 No alias Plant self-incompatibility protein S1 family 0.11 Archaeplastida
GSVIVT01014873001 No alias S-protein homolog 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01014874001 No alias S-protein homolog 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G04645 No alias Plant self-incompatibility protein S1 family 0.06 LandPlants
AT3G17080 No alias Plant self-incompatibility protein S1 family 0.09 LandPlants
AT4G16195 No alias Plant self-incompatibility protein S1 family 0.11 LandPlants
AT4G24973 No alias Plant self-incompatibility protein S1 family 0.09 LandPlants
AT4G24974 No alias Plant self-incompatibility protein S1 family 0.12 LandPlants
AT4G24975 No alias Plant self-incompatibility protein S1 family 0.1 LandPlants
AT1G04645 No alias Plant self-incompatibility protein S1 family 0.06 SeedPlants
AT3G17080 No alias Plant self-incompatibility protein S1 family 0.09 SeedPlants
AT4G16195 No alias Plant self-incompatibility protein S1 family 0.1 SeedPlants
AT4G24973 No alias Plant self-incompatibility protein S1 family 0.08 SeedPlants
AT4G24974 No alias Plant self-incompatibility protein S1 family 0.09 SeedPlants
AT4G24975 No alias Plant self-incompatibility protein S1 family 0.09 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0006863 purine nucleobase transport RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!