AT3G16850


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000349 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000349_tree ,
OG_02_0000329 (LandPlants) Phylogenetic Tree(s): OG_02_0000329_tree ,
OG_03_0001972 (SeedPlants) Phylogenetic Tree(s): OG_03_0001972_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G16850
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00118570 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.06 Archaeplastida
AMTR_s00107p00122980 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
GSVIVT01026985001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 Archaeplastida
GSVIVT01028057001 No alias Probable polygalacturonase OS=Vitis vinifera 0.04 Archaeplastida
Gb_39001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
LOC_Os02g15690.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.05 Archaeplastida
LOC_Os03g61800.2 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
LOC_Os05g50960.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.06 Archaeplastida
LOC_Os12g36810.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
Mp7g13870.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
Pp3c6_7160V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo78556 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 Archaeplastida
Solyc05g049980.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
Solyc08g082170.4.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
Solyc09g075460.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.08 Archaeplastida
Zm00001e006249_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Zm00001e026646_P002 No alias no hits & (original description: none) 0.04 Archaeplastida
AMTR_s00045p00118570 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 LandPlants
AMTR_s00107p00122980 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 LandPlants
GSVIVT01026985001 No alias Probable polygalacturonase OS=Vitis vinifera 0.02 LandPlants
Gb_39001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 LandPlants
LOC_Os02g15690.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 LandPlants
LOC_Os03g03350.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 LandPlants
LOC_Os05g50960.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 LandPlants
LOC_Os12g36810.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 LandPlants
Mp7g13870.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 LandPlants
Solyc08g081480.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 LandPlants
Solyc08g082170.4.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 LandPlants
Solyc09g075460.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 LandPlants
Gb_39001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 SeedPlants
Solyc09g075460.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 SeedPlants
Zm00001e006249_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0005773 vacuole IDA Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
BP GO:0006816 calcium ion transport RCA Interproscan
BP GO:0007030 Golgi organization RCA Interproscan
CC GO:0009505 plant-type cell wall IDA Interproscan
BP GO:0009637 response to blue light RCA Interproscan
BP GO:0009651 response to salt stress RCA Interproscan
BP GO:0010155 regulation of proton transport RCA Interproscan
BP GO:0046777 protein autophosphorylation RCA Interproscan
BP GO:0048767 root hair elongation RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 135 415
IPR024535 Pectate_lyase_SF_prot 40 97
No external refs found!