AT3G16250 (NDF4)

Aliases : NDF4

Description : NDH-dependent cyclic electron flow 1

Gene families : OG_01_0004104 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004104_tree ,
OG_02_0004224 (LandPlants) Phylogenetic Tree(s): OG_02_0004224_tree ,
OG_03_0004634 (SeedPlants) Phylogenetic Tree(s): OG_03_0004634_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G16250
Cluster	HCCA: Cluster_142

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00109p00146830	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.chlororespiration.NAD...	0.09	Archaeplastida
GSVIVT01017041001	No alias	Photosynthesis.photophosphorylation.chlororespiration.NAD...	0.11	Archaeplastida
GSVIVT01035716001	No alias	Photosynthetic NDH subunit of subcomplex B 3,...	0.1	Archaeplastida
LOC_Os07g30670.1	No alias	component PnsB3/NDF4 of NDH subcomplex B	0.1	Archaeplastida
Solyc08g083360.3.1	No alias	component PnsB3/NDF4 of NDH subcomplex B	0.15	Archaeplastida
Zm00001e032359_P001	No alias	Photosynthetic NDH subunit of subcomplex B 3,...	0.07	Archaeplastida
Zm00001e035003_P001	No alias	component PnsB3/NDF4 of NDH subcomplex B	0.12	Archaeplastida
AMTR_s00109p00146830	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.chlororespiration.NAD...	0.09	LandPlants
GSVIVT01017041001	No alias	Photosynthesis.photophosphorylation.chlororespiration.NAD...	0.1	LandPlants
GSVIVT01035716001	No alias	Photosynthetic NDH subunit of subcomplex B 3,...	0.09	LandPlants
Gb_06245	No alias	no hits & (original description: none)	0.01	LandPlants
LOC_Os07g30670.1	No alias	component PnsB3/NDF4 of NDH subcomplex B	0.09	LandPlants
Solyc08g083360.3.1	No alias	component PnsB3/NDF4 of NDH subcomplex B	0.15	LandPlants
Zm00001e032359_P001	No alias	Photosynthetic NDH subunit of subcomplex B 3,...	0.05	LandPlants
Zm00001e035003_P001	No alias	component PnsB3/NDF4 of NDH subcomplex B	0.1	LandPlants
AMTR_s00109p00146830	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.chlororespiration.NAD...	0.09	SeedPlants
GSVIVT01017041001	No alias	Photosynthesis.photophosphorylation.chlororespiration.NAD...	0.11	SeedPlants
GSVIVT01035716001	No alias	Photosynthetic NDH subunit of subcomplex B 3,...	0.09	SeedPlants
Gb_06245	No alias	no hits & (original description: none)	0.01	SeedPlants
LOC_Os07g30670.1	No alias	component PnsB3/NDF4 of NDH subcomplex B	0.09	SeedPlants
Solyc08g083360.3.1	No alias	component PnsB3/NDF4 of NDH subcomplex B	0.15	SeedPlants
Zm00001e032359_P001	No alias	Photosynthetic NDH subunit of subcomplex B 3,...	0.05	SeedPlants
Zm00001e035003_P001	No alias	component PnsB3/NDF4 of NDH subcomplex B	0.1	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006098	pentose-phosphate shunt	RCA	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006739	NADP metabolic process	None	Extended
BP	GO:0006740	NADPH regeneration	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006873	cellular ion homeostasis	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
MF	GO:0009055	electron transfer activity	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009767	photosynthetic electron transport chain	None	Extended
BP	GO:0009773	photosynthetic electron transport in photosystem I	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)	IDA	Interproscan
CC	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)	IMP	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016143	S-glycoside metabolic process	None	Extended
BP	GO:0016144	S-glycoside biosynthetic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0019252	starch biosynthetic process	RCA	Interproscan
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	RCA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0019757	glycosinolate metabolic process	None	Extended
BP	GO:0019758	glycosinolate biosynthetic process	None	Extended
BP	GO:0019760	glucosinolate metabolic process	RCA	Interproscan
BP	GO:0019761	glucosinolate biosynthetic process	RCA	Interproscan
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0030003	cellular cation homeostasis	RCA	Interproscan
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044550	secondary metabolite biosynthetic process	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050801	ion homeostasis	None	Extended
BP	GO:0051156	glucose 6-phosphate metabolic process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0055080	cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901657	glycosyl compound metabolic process	None	Extended
BP	GO:1901659	glycosyl compound biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001041	2Fe-2S_ferredoxin-type	119	166

External Links

No external refs found!

AT3G16250 (NDF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation