AT3G15000

Description : cobalt ion binding

Gene families : OG_01_0006091 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006091_tree ,
OG_02_0004143 (LandPlants) Phylogenetic Tree(s): OG_02_0004143_tree ,
OG_03_0002547 (SeedPlants) Phylogenetic Tree(s): OG_03_0002547_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G15000
Cluster	HCCA: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
MA_3550g0010	No alias	Multiple organellar RNA editing factor 8,...	0.03	Archaeplastida
Solyc10g007180.2.1	No alias	RNA editing factor (MORF)	0.04	Archaeplastida
Solyc12g014230.2.1	No alias	RNA editing factor (MORF)	0.04	Archaeplastida
MA_10293670g0010	No alias	RNA editing factor (MORF)	0.02	LandPlants
MA_3550g0010	No alias	Multiple organellar RNA editing factor 8,...	0.03	LandPlants
Solyc10g007180.2.1	No alias	RNA editing factor (MORF)	0.04	LandPlants
Solyc12g014230.2.1	No alias	RNA editing factor (MORF)	0.04	LandPlants
AMTR_s00021p00105410	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.01	SeedPlants
MA_10293670g0010	No alias	RNA editing factor (MORF)	0.02	SeedPlants
MA_3550g0010	No alias	Multiple organellar RNA editing factor 8,...	0.03	SeedPlants
MA_8126g0010	No alias	Multiple organellar RNA editing factor 8,...	0.02	SeedPlants
Solyc10g007180.2.1	No alias	RNA editing factor (MORF)	0.04	SeedPlants
Solyc12g014230.2.1	No alias	RNA editing factor (MORF)	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IMP	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IMP	Interproscan
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0050897	cobalt ion binding	IDA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IMP	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G15000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation