AMTR_s00010p00244300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.320

Description : U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana


Gene families : OG_01_0006019 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006019_tree ,
OG_02_0007184 (LandPlants) Phylogenetic Tree(s): OG_02_0007184_tree ,
OG_03_0007725 (SeedPlants) Phylogenetic Tree(s): OG_03_0007725_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00244300
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
AT5G14050 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Cre06.g255950 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.02 Archaeplastida
LOC_Os07g41190.1 No alias SSU processome assembly factor (UTP18) 0.02 Archaeplastida
Mp7g17180.1 No alias SSU processome assembly factor (UTP18) 0.06 Archaeplastida
Pp3c26_4890V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Archaeplastida
Solyc10g080180.3.1 No alias SSU processome assembly factor (UTP18) 0.07 Archaeplastida
AT5G14050 No alias Transducin/WD40 repeat-like superfamily protein 0.03 LandPlants
GSVIVT01003806001 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.03 LandPlants
LOC_Os07g41190.1 No alias SSU processome assembly factor (UTP18) 0.03 LandPlants
Mp7g17180.1 No alias SSU processome assembly factor (UTP18) 0.05 LandPlants
Pp3c26_4890V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 LandPlants
Solyc10g080180.3.1 No alias SSU processome assembly factor (UTP18) 0.06 LandPlants
Zm00001e013263_P001 No alias SSU processome assembly factor (UTP18) 0.03 LandPlants
AT5G14050 No alias Transducin/WD40 repeat-like superfamily protein 0.03 SeedPlants
GSVIVT01000726001 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.02 SeedPlants
GSVIVT01003806001 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.03 SeedPlants
LOC_Os07g41190.1 No alias SSU processome assembly factor (UTP18) 0.03 SeedPlants
Solyc10g080180.3.1 No alias SSU processome assembly factor (UTP18) 0.06 SeedPlants
Zm00001e013263_P001 No alias SSU processome assembly factor (UTP18) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 390 417
IPR001680 WD40_repeat 260 286
No external refs found!