AT3G13870 (RHD3)

Aliases : RHD3

Description : Root hair defective 3 GTP-binding protein (RHD3)

Gene families : OG_01_0001124 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001124_tree ,
OG_02_0001177 (LandPlants) Phylogenetic Tree(s): OG_02_0001177_tree ,
OG_03_0001303 (SeedPlants) Phylogenetic Tree(s): OG_03_0001303_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G13870
Cluster	HCCA: Cluster_181

Target	Alias	Description	ECC score	Gene Family Method
AT1G72960	No alias	Root hair defective 3 GTP-binding protein (RHD3)	0.04	Archaeplastida
GSVIVT01016855001	No alias	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana	0.05	Archaeplastida
Gb_41499	No alias	ER tubulae formation factor (RHD3/RL)	0.05	Archaeplastida
Gb_41500	No alias	ER tubulae formation factor (RHD3/RL)	0.03	Archaeplastida
LOC_Os01g39310.1	No alias	ER tubulae formation factor (RHD3/RL)	0.05	Archaeplastida
MA_2507782g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Pp3c21_11720V3.1	No alias	Root hair defective 3 GTP-binding protein (RHD3)	0.04	Archaeplastida
Smo73603	No alias	Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Solyc03g121590.3.1	No alias	ER tubulae formation factor (RHD3/RL)	0.06	Archaeplastida
Zm00001e018069_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e020502_P002	No alias	ER tubulae formation factor (RHD3/RL)	0.06	Archaeplastida
Zm00001e027781_P001	No alias	ER tubulae formation factor (RHD3/RL)	0.07	Archaeplastida
AT1G72960	No alias	Root hair defective 3 GTP-binding protein (RHD3)	0.04	LandPlants
GSVIVT01016855001	No alias	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana	0.05	LandPlants
Gb_41499	No alias	ER tubulae formation factor (RHD3/RL)	0.03	LandPlants
Gb_41500	No alias	ER tubulae formation factor (RHD3/RL)	0.02	LandPlants
LOC_Os01g39310.1	No alias	ER tubulae formation factor (RHD3/RL)	0.03	LandPlants
Pp3c21_11720V3.1	No alias	Root hair defective 3 GTP-binding protein (RHD3)	0.04	LandPlants
Smo73603	No alias	Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica	0.03	LandPlants
Solyc03g121590.3.1	No alias	ER tubulae formation factor (RHD3/RL)	0.06	LandPlants
Zm00001e020502_P002	No alias	ER tubulae formation factor (RHD3/RL)	0.06	LandPlants
Zm00001e027781_P001	No alias	ER tubulae formation factor (RHD3/RL)	0.07	LandPlants
AT1G72960	No alias	Root hair defective 3 GTP-binding protein (RHD3)	0.04	SeedPlants
GSVIVT01016855001	No alias	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana	0.05	SeedPlants
Gb_41499	No alias	ER tubulae formation factor (RHD3/RL)	0.03	SeedPlants
LOC_Os01g39310.1	No alias	ER tubulae formation factor (RHD3/RL)	0.03	SeedPlants
Solyc03g121590.3.1	No alias	ER tubulae formation factor (RHD3/RL)	0.06	SeedPlants
Zm00001e020502_P002	No alias	ER tubulae formation factor (RHD3/RL)	0.06	SeedPlants
Zm00001e027781_P001	No alias	ER tubulae formation factor (RHD3/RL)	0.07	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000902	cell morphogenesis	RCA	Interproscan
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0006820	anion transport	RCA	Interproscan
BP	GO:0006862	nucleotide transport	RCA	Interproscan
BP	GO:0006865	amino acid transport	RCA	Interproscan
BP	GO:0006886	intracellular protein transport	RCA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IMP	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	RCA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009832	plant-type cell wall biogenesis	IMP	Interproscan
BP	GO:0009932	cell tip growth	IMP	Interproscan
BP	GO:0009932	cell tip growth	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	IMP	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015696	ammonium transport	RCA	Interproscan
BP	GO:0015748	organophosphate ester transport	None	Extended
BP	GO:0015802	basic amino acid transport	RCA	Interproscan
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0015849	organic acid transport	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	RCA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	RCA	Interproscan
BP	GO:0016192	vesicle-mediated transport	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0030029	actin filament-based process	None	Extended
BP	GO:0030036	actin cytoskeleton organization	IMP	Interproscan
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030243	cellulose metabolic process	RCA	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042546	cell wall biogenesis	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	RCA	Interproscan
BP	GO:0043090	amino acid import	RCA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043269	regulation of ion transport	RCA	Interproscan
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0048364	root development	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048527	lateral root development	RCA	Interproscan
BP	GO:0048528	post-embryonic root development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0090696	post-embryonic plant organ development	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR008803	RHD3/Sey1	43	784

External Links

No external refs found!

AT3G13870 (RHD3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation