AT3G13160

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0000198 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000198_tree ,
OG_02_0000086 (LandPlants) Phylogenetic Tree(s): OG_02_0000086_tree ,
OG_03_0000415 (SeedPlants) Phylogenetic Tree(s): OG_03_0000415_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G13160
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AT5G46100	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
LOC_Os01g57630.2	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.02	Archaeplastida
MA_138370g0010	No alias	Pentatricopeptide repeat-containing protein At1g80150,...	0.06	Archaeplastida
Solyc02g079830.1.1	No alias	Pentatricopeptide repeat-containing protein At3g13160,...	0.09	Archaeplastida
Solyc03g031460.1.1	No alias	Pentatricopeptide repeat-containing protein At3g13160,...	0.16	Archaeplastida
Solyc09g014210.3.1	No alias	Pentatricopeptide repeat-containing protein At3g09060...	0.03	Archaeplastida
Zm00001e003447_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e028938_P001	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.07	Archaeplastida
AT5G46100	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	LandPlants
GSVIVT01005273001	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.02	LandPlants
Gb_00757	No alias	Pentatricopeptide repeat-containing protein At5g46100...	0.02	LandPlants
LOC_Os01g57630.2	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.02	LandPlants
MA_107877g0010	No alias	Pentatricopeptide repeat-containing protein At5g39710...	0.02	LandPlants
MA_125741g0010	No alias	Pentatricopeptide repeat-containing protein At5g16420,...	0.02	LandPlants
MA_138370g0010	No alias	Pentatricopeptide repeat-containing protein At1g80150,...	0.03	LandPlants
Pp3c2_27580V3.1	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	LandPlants
Solyc02g079830.1.1	No alias	Pentatricopeptide repeat-containing protein At3g13160,...	0.09	LandPlants
Solyc03g031460.1.1	No alias	Pentatricopeptide repeat-containing protein At3g13160,...	0.16	LandPlants
Solyc09g014210.3.1	No alias	Pentatricopeptide repeat-containing protein At3g09060...	0.02	LandPlants
Zm00001e003447_P001	No alias	no hits & (original description: none)	0.03	LandPlants
Zm00001e028938_P001	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.07	LandPlants
AMTR_s00029p00105510	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g36680,...	0.03	SeedPlants
AMTR_s00029p00106010	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g36680,...	0.02	SeedPlants
GSVIVT01005273001	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.02	SeedPlants
GSVIVT01018992001	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.02	SeedPlants
LOC_Os01g57630.2	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.02	SeedPlants
LOC_Os01g58080.1	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.03	SeedPlants
LOC_Os02g42210.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.02	SeedPlants
Solyc02g062910.3.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.02	SeedPlants
Solyc02g079830.1.1	No alias	Pentatricopeptide repeat-containing protein At3g13160,...	0.07	SeedPlants
Solyc02g085650.4.1	No alias	Pentatricopeptide repeat-containing protein At4g36680,...	0.02	SeedPlants
Solyc03g031460.1.1	No alias	Pentatricopeptide repeat-containing protein At3g13160,...	0.15	SeedPlants
Solyc10g005280.1.1	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.11	SeedPlants
Zm00001e015190_P001	No alias	Pentatricopeptide repeat-containing protein At2g18520,...	0.04	SeedPlants
Zm00001e019591_P001	No alias	PPR-type mitochondrial ribosome regulatory protein (PPR336)	0.03	SeedPlants
Zm00001e028938_P001	No alias	Pentatricopeptide repeat-containing protein At1g55890,...	0.06	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016569	covalent chromatin modification	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034968	histone lysine methylation	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	175	220
IPR002885	Pentatricopeptide_repeat	112	152
IPR002885	Pentatricopeptide_repeat	246	293
IPR002885	Pentatricopeptide_repeat	319	343

External Links

No external refs found!

AT3G13160

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation