AT3G11960


Description : Cleavage and polyadenylation specificity factor (CPSF) A subunit protein


Gene families : OG_01_0005984 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005984_tree ,
OG_02_0007787 (LandPlants) Phylogenetic Tree(s): OG_02_0007787_tree ,
OG_03_0008854 (SeedPlants) Phylogenetic Tree(s): OG_03_0008854_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G11960
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00260810 evm_27.TU.AmTr_v1... DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica 0.06 Archaeplastida
GSVIVT01033428001 No alias Spliceosome-associated protein 130 A OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_25386 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os07g10390.1 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10432916g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_129261g0030 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_20031g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_8503923g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo448595 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc10g080630.2.1 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e033071_P001 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.13 Archaeplastida
AMTR_s00002p00260810 evm_27.TU.AmTr_v1... DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica 0.05 LandPlants
GSVIVT01033428001 No alias Spliceosome-associated protein 130 A OS=Arabidopsis thaliana 0.06 LandPlants
Gb_25386 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.02 LandPlants
MA_10432916g0010 No alias no hits & (original description: none) 0.06 LandPlants
MA_129261g0030 No alias no hits & (original description: none) 0.05 LandPlants
Pp3c24_19520V3.1 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.02 LandPlants
Smo448595 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana 0.04 LandPlants
Solyc10g080630.2.1 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.06 LandPlants
Zm00001e033071_P001 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.13 LandPlants
AMTR_s00002p00260810 evm_27.TU.AmTr_v1... DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica 0.05 SeedPlants
GSVIVT01033428001 No alias Spliceosome-associated protein 130 A OS=Arabidopsis thaliana 0.05 SeedPlants
Gb_25386 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.02 SeedPlants
LOC_Os07g10390.1 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.02 SeedPlants
MA_10432916g0010 No alias no hits & (original description: none) 0.06 SeedPlants
MA_129261g0030 No alias no hits & (original description: none) 0.04 SeedPlants
Solyc10g080630.2.1 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.06 SeedPlants
Zm00001e033071_P001 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.12 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Interproscan
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
BP GO:0009755 hormone-mediated signaling pathway RCA Interproscan
BP GO:0010182 sugar mediated signaling pathway RCA Interproscan
BP GO:0048825 cotyledon development RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 937 1330
No external refs found!