Zm00001e017643_P001


Description : chromatin remodeling factor (Iswi)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0003200 (LandPlants) Phylogenetic Tree(s): OG_02_0003200_tree ,
OG_03_0004460 (SeedPlants) Phylogenetic Tree(s): OG_03_0004460_tree

Sequence : coding (download), protein (download)

No expression profile available


Type Description Actions
Neighborhood HRR: Zm00001e017643_P001
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.04 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.02 Archaeplastida
Cpa|evm.model.tig00000144.188 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.01 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.01 Archaeplastida
Cpa|evm.model.tig00000691.35 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00000863.2 No alias TATA-binding protein-associated factor BTAF1... 0.01 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.1 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 Archaeplastida
Cre16.g647602 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.1 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.08 Archaeplastida
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.11 Archaeplastida
MA_10437250g0010 No alias Probable helicase CHR10 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
Mp1g07380.1 No alias CHD3-type chromatin-remodeling factor CHR7... 0.02 Archaeplastida
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.07 Archaeplastida
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Pp3c10_6710V3.1 No alias SNF2 domain-containing protein / helicase... 0.04 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.05 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.04 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.06 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c20_11500V3.1 No alias chromatin remodeling 5 0.05 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.03 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.03 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.08 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.08 Archaeplastida
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.1 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.05 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.03 LandPlants
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.04 LandPlants
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.05 LandPlants
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.01 LandPlants
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.05 LandPlants
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 LandPlants
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.05 LandPlants
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.11 LandPlants
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.03 SeedPlants
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.04 SeedPlants
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.04 SeedPlants
MA_102992g0020 No alias Probable chromatin-remodeling complex ATPase chain... 0.01 SeedPlants
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.04 SeedPlants
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.11 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
MF GO:0031491 nucleosome binding IEA Interproscan
BP GO:0043044 ATP-dependent chromatin remodeling IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR015195 SLIDE 942 1052
IPR000330 SNF2_dom 251 518
IPR015194 ISWI_HAND-dom 802 863
IPR001650 Helicase_C 541 653
No external refs found!