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  5. AMTR_s00010p00233620

AMTR_s00010p00233620 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.273

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.RAE1 scaffold nucleoporin


Gene families : OG_01_0003816 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003816_tree ,
OG_02_0004359 (LandPlants) Phylogenetic Tree(s): OG_02_0004359_tree ,
OG_03_0004418 (SeedPlants) Phylogenetic Tree(s): OG_03_0004418_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00233620
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
MA_27152g0010 No alias Protein RAE1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_27152g0010 No alias Protein RAE1 OS=Arabidopsis thaliana... 0.03 LandPlants
Mp5g18210.1 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.01 LandPlants
LOC_Os08g07960.1 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.01 SeedPlants
MA_27152g0010 No alias Protein RAE1 OS=Arabidopsis thaliana... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 111 142
IPR001680 WD40_repeat 23 56
IPR001680 WD40_repeat 68 99
IPR001680 WD40_repeat 247 274
No external refs found!