Zm00001e015566_P003


Description : OTP51 plastidial RNA splicing factor


Gene families : OG_01_0007260 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007260_tree ,
OG_02_0006849 (LandPlants) Phylogenetic Tree(s): OG_02_0006849_tree ,
OG_03_0008359 (SeedPlants) Phylogenetic Tree(s): OG_03_0008359_tree

Sequence : coding (download), protein (download)

No expression profile available


Type Description Actions
Neighborhood HRR: Zm00001e015566_P003
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
AT2G15820 OTP51 endonucleases 0.09 Archaeplastida
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.06 Archaeplastida
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.08 Archaeplastida
Smo438810 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.07 Archaeplastida
AT2G15820 OTP51 endonucleases 0.08 LandPlants
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.04 LandPlants
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.05 LandPlants
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.06 LandPlants
Pp3c25_10050V3.1 No alias endonucleases 0.01 LandPlants
Smo438810 No alias RNA processing.organelle machineries.RNA... 0.03 LandPlants
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.07 LandPlants
AT2G15820 OTP51 endonucleases 0.08 SeedPlants
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.05 SeedPlants
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.04 SeedPlants
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.06 SeedPlants
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.08 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 507 532
IPR002885 Pentatricopeptide_repeat 469 497
IPR002885 Pentatricopeptide_repeat 184 206
IPR002885 Pentatricopeptide_repeat 363 408
IPR004860 LAGLIDADG_2 570 736
No external refs found!