AT3G09650 (CRM3, HCF152)

Aliases : CRM3, HCF152

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0001060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001060_tree ,
OG_02_0004955 (LandPlants) Phylogenetic Tree(s): OG_02_0004955_tree ,
OG_03_0006068 (SeedPlants) Phylogenetic Tree(s): OG_03_0006068_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G09650
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00179800	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g17616...	0.02	Archaeplastida
AMTR_s00002p00272000	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g03100,...	0.03	Archaeplastida
AMTR_s00019p00220910	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g03100,...	0.05	Archaeplastida
AT1G69290	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.05	Archaeplastida
LOC_Os07g31310.1	No alias	Pentatricopeptide repeat-containing protein At4g17616...	0.03	Archaeplastida
MA_46631g0010	No alias	Pentatricopeptide repeat-containing protein At1g69290...	0.03	Archaeplastida
MA_743669g0010	No alias	Pentatricopeptide repeat-containing protein At1g03100,...	0.03	Archaeplastida
Smo105853	No alias	Pentatricopeptide repeat-containing protein At3g09650,...	0.03	Archaeplastida
Solyc09g007320.4.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e020088_P001	No alias	HCF152 plastidial RNA transcript stability factor	0.04	Archaeplastida
Solyc09g007320.4.1	No alias	no hits & (original description: none)	0.03	LandPlants
Solyc09g007320.4.1	No alias	no hits & (original description: none)	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	RCA	Interproscan
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	None	Extended
BP	GO:0005984	disaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IMP	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009311	oligosaccharide metabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019252	starch biosynthetic process	RCA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	294	336
IPR002885	Pentatricopeptide_repeat	448	478
IPR002885	Pentatricopeptide_repeat	416	442
IPR002885	Pentatricopeptide_repeat	559	585
IPR002885	Pentatricopeptide_repeat	234	282
IPR002885	Pentatricopeptide_repeat	593	639
IPR002885	Pentatricopeptide_repeat	486	533

External Links

No external refs found!

AT3G09650 (CRM3, HCF152)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation