AT3G09650 (CRM3, HCF152)


Aliases : CRM3, HCF152

Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0001060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001060_tree ,
OG_02_0004955 (LandPlants) Phylogenetic Tree(s): OG_02_0004955_tree ,
OG_03_0006068 (SeedPlants) Phylogenetic Tree(s): OG_03_0006068_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G09650
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00179800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g17616... 0.02 Archaeplastida
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.05 Archaeplastida
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.03 Archaeplastida
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
Smo105853 No alias Pentatricopeptide repeat-containing protein At3g09650,... 0.03 Archaeplastida
Solyc09g007320.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e020088_P001 No alias HCF152 plastidial RNA transcript stability factor 0.04 Archaeplastida
Solyc09g007320.4.1 No alias no hits & (original description: none) 0.03 LandPlants
Solyc09g007320.4.1 No alias no hits & (original description: none) 0.03 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000023 maltose metabolic process RCA Interproscan
MF GO:0003729 mRNA binding IDA Interproscan
BP GO:0006397 mRNA processing IMP Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
BP GO:0019252 starch biosynthetic process RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 294 336
IPR002885 Pentatricopeptide_repeat 448 478
IPR002885 Pentatricopeptide_repeat 416 442
IPR002885 Pentatricopeptide_repeat 559 585
IPR002885 Pentatricopeptide_repeat 234 282
IPR002885 Pentatricopeptide_repeat 593 639
IPR002885 Pentatricopeptide_repeat 486 533
No external refs found!