AMTR_s00010p00228620 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.258

Description : Chromatin organisation.histones.H2B-type histone


Gene families : OG_01_0000186 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000186_tree ,
OG_02_0000249 (LandPlants) Phylogenetic Tree(s): OG_02_0000249_tree ,
OG_03_0000187 (SeedPlants) Phylogenetic Tree(s): OG_03_0000187_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00228620
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.18 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g264900 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g276550 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre13.g570050 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre17.g709150 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre17.g710450 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre17.g711750 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre17.g713450 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre17.g714050 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
GSVIVT01025023001 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Gb_26315 No alias histone (H2B) 0.03 Archaeplastida
LOC_Os03g17084.1 No alias histone (H2B) 0.04 Archaeplastida
Solyc02g038690.1.1 No alias histone (H2B) 0.03 Archaeplastida
Solyc03g071620.2.1 No alias histone (H2B) 0.03 Archaeplastida
Solyc05g055440.1.1 No alias histone (H2B) 0.03 Archaeplastida
Solyc06g074790.2.1 No alias histone (H2B) 0.03 Archaeplastida
Solyc11g007920.1.1 No alias histone (H2B) 0.03 Archaeplastida
Solyc11g007930.1.1 No alias histone (H2B) 0.03 Archaeplastida
Solyc11g066430.2.1 No alias histone (H2B) 0.03 Archaeplastida
Zm00001e004028_P001 No alias histone (H2B) 0.05 Archaeplastida
Zm00001e020484_P002 No alias histone (H2B) 0.05 Archaeplastida
Zm00001e027803_P001 No alias histone (H2B) 0.03 Archaeplastida
Zm00001e038466_P001 No alias histone (H2B) 0.04 Archaeplastida
GSVIVT01025023001 No alias Chromatin organisation.histones.H2B-type histone 0.02 LandPlants
Gb_12082 No alias histone (H2B) 0.02 LandPlants
Gb_26315 No alias histone (H2B) 0.03 LandPlants
Gb_32754 No alias histone (H2B) 0.02 LandPlants
LOC_Os01g05900.1 No alias histone (H2B) 0.02 LandPlants
MA_9293473g0010 No alias histone (H2B) 0.02 LandPlants
Pp3c17_15800V3.1 No alias Histone superfamily protein 0.02 LandPlants
Solyc02g038690.1.1 No alias histone (H2B) 0.03 LandPlants
Solyc05g055440.1.1 No alias histone (H2B) 0.03 LandPlants
Solyc06g074790.2.1 No alias histone (H2B) 0.03 LandPlants
Solyc11g007930.1.1 No alias histone (H2B) 0.03 LandPlants
Zm00001e020484_P002 No alias histone (H2B) 0.02 LandPlants
GSVIVT01025023001 No alias Chromatin organisation.histones.H2B-type histone 0.02 SeedPlants
Gb_12082 No alias histone (H2B) 0.02 SeedPlants
Gb_26315 No alias histone (H2B) 0.03 SeedPlants
Gb_32754 No alias histone (H2B) 0.02 SeedPlants
LOC_Os01g05900.1 No alias histone (H2B) 0.02 SeedPlants
MA_10436516g0020 No alias histone (H2B) 0.01 SeedPlants
MA_6078786g0010 No alias histone (H2B) 0.01 SeedPlants
MA_9293473g0010 No alias histone (H2B) 0.02 SeedPlants
Solyc02g038690.1.1 No alias histone (H2B) 0.03 SeedPlants
Solyc05g055440.1.1 No alias histone (H2B) 0.03 SeedPlants
Solyc06g074790.2.1 No alias histone (H2B) 0.03 SeedPlants
Solyc11g007920.1.1 No alias histone (H2B) 0.02 SeedPlants
Solyc11g007930.1.1 No alias histone (H2B) 0.03 SeedPlants
Zm00001e020484_P002 No alias histone (H2B) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 60 126
No external refs found!