Zm00001e013639_P001


Description : transcription factor (ARF)


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0005597 (LandPlants) Phylogenetic Tree(s): OG_02_0005597_tree ,
OG_03_0002193 (SeedPlants) Phylogenetic Tree(s): OG_03_0002193_tree

Sequence : coding (download), protein (download)

No expression profile available


Type Description Actions
Neighborhood HRR: Zm00001e013639_P001
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00141830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00092p00072950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00148p00046020 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AMTR_s00155p00082980 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AMTR_s00211p00025860 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
AT1G59750 ARF1 auxin response factor 1 0.05 Archaeplastida
AT3G61830 ARF18 auxin response factor 18 0.03 Archaeplastida
AT4G23980 ARF9 auxin response factor 9 0.02 Archaeplastida
GSVIVT01032251001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
Gb_32864 No alias transcription factor (ARF) 0.02 Archaeplastida
Gb_33804 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_39685 No alias transcription factor (ARF) 0.02 Archaeplastida
Gb_39786 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os01g13520.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os02g06910.1 No alias transcription factor (ARF) 0.06 Archaeplastida
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os05g48870.1 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.1 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.03 Archaeplastida
MA_103763g0010 No alias Auxin response factor 6 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c1_14480V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c26_11550V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c2_25890V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c4_12970V3.1 No alias auxin response factor 16 0.04 Archaeplastida
Smo181406 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
Solyc01g103050.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc05g047460.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc05g056040.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc06g075150.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.07 Archaeplastida
Solyc12g042070.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e006577_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e016366_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e020205_P004 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e025163_P001 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e039552_P004 No alias transcription factor (ARF) 0.06 Archaeplastida
GSVIVT01032251001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 LandPlants
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.03 LandPlants
GSVIVT01032251001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 SeedPlants
Solyc05g047460.3.1 No alias transcription factor (ARF) 0.02 SeedPlants
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 1011 1099
IPR003340 B3_DNA-bd 148 249
IPR010525 Auxin_resp 274 357
No external refs found!