Zm00001e013639_P001

Description : transcription factor (ARF)

Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0005597 (LandPlants) Phylogenetic Tree(s): OG_02_0005597_tree ,
OG_03_0002193 (SeedPlants) Phylogenetic Tree(s): OG_03_0002193_tree

Sequence : coding (download), protein (download)

No expression profile available

Type	Description	Actions
Neighborhood	HRR: Zm00001e013639_P001
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00141830	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00092p00072950	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00148p00046020	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
AMTR_s00155p00082980	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00211p00025860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.06	Archaeplastida
AT1G59750	ARF1	auxin response factor 1	0.05	Archaeplastida
AT3G61830	ARF18	auxin response factor 18	0.03	Archaeplastida
AT4G23980	ARF9	auxin response factor 9	0.02	Archaeplastida
GSVIVT01032251001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
Gb_32864	No alias	transcription factor (ARF)	0.02	Archaeplastida
Gb_33804	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_39685	No alias	transcription factor (ARF)	0.02	Archaeplastida
Gb_39786	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os01g13520.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os02g06910.1	No alias	transcription factor (ARF)	0.06	Archaeplastida
LOC_Os04g36054.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os04g56850.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os04g57610.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os05g48870.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os11g32110.1	No alias	transcription factor (ARF)	0.1	Archaeplastida
LOC_Os12g41950.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_103763g0010	No alias	Auxin response factor 6 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Pp3c1_14480V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c2_25890V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c4_12970V3.1	No alias	auxin response factor 16	0.04	Archaeplastida
Smo181406	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Solyc01g103050.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc05g047460.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc05g056040.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc06g075150.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc07g016180.3.1	No alias	transcription factor (ARF)	0.07	Archaeplastida
Solyc12g042070.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e016366_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e020205_P004	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e025163_P001	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e039552_P004	No alias	transcription factor (ARF)	0.06	Archaeplastida
GSVIVT01032251001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	LandPlants
Solyc07g016180.3.1	No alias	transcription factor (ARF)	0.03	LandPlants
GSVIVT01032251001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	SeedPlants
Solyc05g047460.3.1	No alias	transcription factor (ARF)	0.02	SeedPlants
Solyc07g016180.3.1	No alias	transcription factor (ARF)	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	1011	1099
IPR003340	B3_DNA-bd	148	249
IPR010525	Auxin_resp	274	357

External Links

No external refs found!

Zm00001e013639_P001

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation