1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e013363_P002

Zm00001e013363_P002


Description : histone demethylase (KDM5). transcription factor (JUMONJI)


Gene families : OG_01_0001111 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001111_tree ,
OG_02_0005382 (LandPlants) Phylogenetic Tree(s): OG_02_0005382_tree ,
OG_03_0006202 (SeedPlants) Phylogenetic Tree(s): OG_03_0006202_tree

Sequence : coding (download), protein (download)

No expression profile available


Type Description Actions
Neighborhood HRR: Zm00001e013363_P002
Cluster HCCA: Cluster_284

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 Archaeplastida
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 Archaeplastida
Gb_27431 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 Archaeplastida
Solyc06g008490.3.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 LandPlants
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 LandPlants
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003347 JmjC_dom 483 599
IPR019787 Znf_PHD-finger 312 358
IPR019787 Znf_PHD-finger 1761 1805
IPR013637 Lys_sp_deMease-like_dom 1007 1246
IPR013637 Lys_sp_deMease-like_dom 958 1048
IPR013637 Lys_sp_deMease-like_dom 1370 1617
IPR001606 ARID_dom 90 184
IPR003349 JmjN 19 52
IPR004198 Znf_C5HC2 692 742
No external refs found!