AT3G06980


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG_01_0006573 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006573_tree ,
OG_02_0006254 (LandPlants) Phylogenetic Tree(s): OG_02_0006254_tree ,
OG_03_0008567 (SeedPlants) Phylogenetic Tree(s): OG_03_0008567_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G06980
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00149950 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.06 Archaeplastida
GSVIVT01017719001 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.16 Archaeplastida
Gb_19265 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.07 Archaeplastida
LOC_Os03g01830.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.06 Archaeplastida
MA_10437125g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp8g11020.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... 0.06 Archaeplastida
Pp3c13_13090V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.16 Archaeplastida
Smo142751 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 Archaeplastida
Smo403724 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.06 Archaeplastida
Solyc11g045180.3.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e039095_P002 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.09 Archaeplastida
AMTR_s00045p00149950 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.05 LandPlants
GSVIVT01017719001 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.14 LandPlants
Gb_19265 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.06 LandPlants
LOC_Os03g01830.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.05 LandPlants
MA_10437125g0010 No alias no hits & (original description: none) 0.06 LandPlants
Mp8g11020.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... 0.05 LandPlants
Pp3c13_13090V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.13 LandPlants
Smo142751 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.02 LandPlants
Smo403724 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.04 LandPlants
Solyc11g045180.3.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 LandPlants
Zm00001e039095_P002 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.08 LandPlants
AMTR_s00045p00149950 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.04 SeedPlants
GSVIVT01017719001 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.14 SeedPlants
Gb_19265 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.06 SeedPlants
LOC_Os03g01830.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.05 SeedPlants
MA_10437125g0010 No alias no hits & (original description: none) 0.04 SeedPlants
Solyc11g045180.3.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 SeedPlants
Zm00001e039095_P002 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.07 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006399 tRNA metabolic process RCA Interproscan
BP GO:0006655 phosphatidylglycerol biosynthetic process RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009658 chloroplast organization RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0010103 stomatal complex morphogenesis RCA Interproscan
BP GO:0016226 iron-sulfur cluster assembly RCA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 622 738
IPR011545 DEAD/DEAH_box_helicase_dom 399 574
No external refs found!