Zm00001e012024_P001


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0000008 (LandPlants) Phylogenetic Tree(s): OG_02_0000008_tree ,
OG_03_0017088 (SeedPlants) Phylogenetic Tree(s): OG_03_0017088_tree

Sequence : coding (download), protein (download)

No expression profile available


Type Description Actions
Neighborhood HRR: Zm00001e012024_P001
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00001p00270400 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00002p00262760 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00010p00214260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00053p00228660 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.04 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT3G04100 AGL57 AGAMOUS-like 57 0.03 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G60440 AGL62 AGAMOUS-like 62 0.02 Archaeplastida
Cre11.g467577 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01009815001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01027577001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
Gb_15398 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Gb_30604 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_38920 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_41550 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g06750.1 No alias transcription factor (MADS/AGL) 0.09 Archaeplastida
LOC_Os06g11330.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os07g01820.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os08g41960.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_758606g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc02g089200.4.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc03g114830.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc03g114840.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc05g015750.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc07g055920.4.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e000638_P004 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e015924_P003 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
AMTR_s00002p00262760 evm_27.TU.AmTr_v1... No description available 0.04 LandPlants
AMTR_s00013p00103080 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.04 LandPlants
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.03 LandPlants
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 LandPlants
AT2G45650 AGL6 AGAMOUS-like 6 0.03 LandPlants
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.02 LandPlants
AT3G04100 AGL57 AGAMOUS-like 57 0.03 LandPlants
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.02 LandPlants
AT5G62165 AGL42 AGAMOUS-like 42 0.03 LandPlants
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 LandPlants
Gb_12778 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Gb_30604 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Gb_38922 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Gb_41550 No alias transcription factor (MADS/AGL) 0.03 LandPlants
LOC_Os06g06750.1 No alias transcription factor (MADS/AGL) 0.09 LandPlants
LOC_Os07g01820.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 LandPlants
MA_20180g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 LandPlants
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.04 LandPlants
Solyc03g114840.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.02 LandPlants
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 85 172
No external refs found!