AT3G05670

Description : RING/U-box protein

Gene families : OG_01_0002613 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002613_tree ,
OG_02_0002797 (LandPlants) Phylogenetic Tree(s): OG_02_0002797_tree ,
OG_03_0002932 (SeedPlants) Phylogenetic Tree(s): OG_03_0002932_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G05670
Cluster	HCCA: Cluster_247

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00103590	evm_27.TU.AmTr_v1...	No description available	0.02	Archaeplastida
Cpa\|evm.model.tig00000405.51	No alias	No description available	0.01	Archaeplastida
MA_10430995g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc01g100130.3.1	No alias	no hits & (original description: none)	0.08	Archaeplastida
AMTR_s00057p00103590	evm_27.TU.AmTr_v1...	No description available	0.02	LandPlants
MA_10430995g0010	No alias	no hits & (original description: none)	0.03	LandPlants
Solyc01g100130.3.1	No alias	no hits & (original description: none)	0.07	LandPlants
MA_10430995g0010	No alias	no hits & (original description: none)	0.02	SeedPlants
Solyc01g100130.3.1	No alias	no hits & (original description: none)	0.06	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	505	551
IPR001841	Znf_RING	412	455

External Links

No external refs found!

AT3G05670

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation