Zm00001e011244_P001

Description : core component Gar1 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex

Gene families : OG_01_0005231 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005231_tree ,
OG_02_0006383 (LandPlants) Phylogenetic Tree(s): OG_02_0006383_tree ,
OG_03_0064898 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

No expression profile available

Type	Description	Actions
Neighborhood	HRR: Zm00001e011244_P001
Cluster	HCCA: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method
AT3G03920	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.04	Archaeplastida
Cpa\|evm.model.tig00000310.30	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	Archaeplastida
Cre13.g567850	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.04	Archaeplastida
Gb_17575	No alias	core component Gar1 of H/ACA small nucleolar...	0.03	Archaeplastida
LOC_Os11g37080.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.04	Archaeplastida
Pp3c25_15020V3.1	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.08	Archaeplastida
Pp3c5_28430V3.1	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.03	Archaeplastida
Solyc10g078540.3.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.05	Archaeplastida
AT3G03920	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.03	LandPlants
GSVIVT01033401001	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	LandPlants
LOC_Os11g37080.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.04	LandPlants
Pp3c25_15020V3.1	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.05	LandPlants
Solyc10g078540.3.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.05	LandPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007504	H/ACA_rnp_Gar1/Naf1	83	175

External Links

No external refs found!