AT3G05500


Description : Rubber elongation factor protein (REF)


Gene families : OG_01_0001611 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001611_tree ,
OG_02_0001211 (LandPlants) Phylogenetic Tree(s): OG_02_0001211_tree ,
OG_03_0001008 (SeedPlants) Phylogenetic Tree(s): OG_03_0001008_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G05500
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00185970 evm_27.TU.AmTr_v1... Lipid metabolism.lipid bodies-associated activities.LDAP protein 0.03 Archaeplastida
GSVIVT01027980001 No alias Lipid metabolism.lipid bodies-associated activities.LDAP protein 0.03 Archaeplastida
GSVIVT01031148001 No alias Lipid metabolism.lipid bodies-associated activities.LDAP protein 0.04 Archaeplastida
MA_23368g0010 No alias associated factor (LDAP) 0.02 Archaeplastida
Solyc09g074930.3.1 No alias associated factor (LDAP) 0.02 Archaeplastida
Zm00001e027499_P002 No alias associated factor (LDAP) 0.03 Archaeplastida
AMTR_s00013p00185970 evm_27.TU.AmTr_v1... Lipid metabolism.lipid bodies-associated activities.LDAP protein 0.03 LandPlants
GSVIVT01031148001 No alias Lipid metabolism.lipid bodies-associated activities.LDAP protein 0.02 LandPlants
MA_23368g0010 No alias associated factor (LDAP) 0.02 LandPlants
Solyc09g074930.3.1 No alias associated factor (LDAP) 0.02 LandPlants
Zm00001e027499_P002 No alias associated factor (LDAP) 0.03 LandPlants
AMTR_s00013p00185970 evm_27.TU.AmTr_v1... Lipid metabolism.lipid bodies-associated activities.LDAP protein 0.03 SeedPlants
MA_23368g0010 No alias associated factor (LDAP) 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005811 lipid droplet IDA Interproscan
BP GO:0006865 amino acid transport RCA Interproscan
BP GO:0010200 response to chitin RCA Interproscan
BP GO:0019915 lipid storage IDA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR008802 REF 17 231
No external refs found!