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  5. AT3G04550

AT3G04550


Description : unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).


Gene families : OG_01_0007494 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007494_tree ,
OG_02_0008575 (LandPlants) Phylogenetic Tree(s): OG_02_0008575_tree ,
OG_03_0010569 (SeedPlants) Phylogenetic Tree(s): OG_03_0010569_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G04550
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
MA_184421g0020 No alias RAF1 assembly factor involved in RuBisCo assembly 0.03 Archaeplastida
Mp1g20960.1 No alias RAF1 assembly factor involved in RuBisCo assembly 0.03 Archaeplastida
Pp3c16_6440V3.1 No alias No annotation 0.04 Archaeplastida
Pp3c18_4320V3.1 No alias No annotation 0.06 Archaeplastida
Smo441634 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 Archaeplastida
Solyc11g006060.2.1 No alias RAF1 assembly factor involved in RuBisCo assembly 0.09 Archaeplastida
Zm00001e006519_P001 No alias RAF1 assembly factor involved in RuBisCo assembly 0.03 Archaeplastida
AMTR_s00009p00163120 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 LandPlants
MA_184421g0020 No alias RAF1 assembly factor involved in RuBisCo assembly 0.02 LandPlants
Pp3c16_6440V3.1 No alias No annotation 0.04 LandPlants
Pp3c18_4320V3.1 No alias No annotation 0.05 LandPlants
Solyc11g006060.2.1 No alias RAF1 assembly factor involved in RuBisCo assembly 0.09 LandPlants
Zm00001e006519_P001 No alias RAF1 assembly factor involved in RuBisCo assembly 0.03 LandPlants
MA_184421g0020 No alias RAF1 assembly factor involved in RuBisCo assembly 0.02 SeedPlants
Solyc11g006060.2.1 No alias RAF1 assembly factor involved in RuBisCo assembly 0.09 SeedPlants
Zm00001e006519_P001 No alias RAF1 assembly factor involved in RuBisCo assembly 0.03 SeedPlants

Type GO Term Name Evidence Source
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!