AT3G03920


Description : H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein


Gene families : OG_01_0005231 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005231_tree ,
OG_02_0006383 (LandPlants) Phylogenetic Tree(s): OG_02_0006383_tree ,
OG_03_0009370 (SeedPlants) Phylogenetic Tree(s): OG_03_0009370_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G03920
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000310.30 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 Archaeplastida
Cre13.g567850 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 Archaeplastida
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.21 Archaeplastida
Gb_17575 No alias core component Gar1 of H/ACA small nucleolar... 0.02 Archaeplastida
Gb_24533 No alias core component Gar1 of H/ACA small nucleolar... 0.07 Archaeplastida
LOC_Os11g37080.1 No alias core component Gar1 of H/ACA small nucleolar... 0.22 Archaeplastida
Mp5g08210.1 No alias core component Gar1 of H/ACA small nucleolar... 0.05 Archaeplastida
Pp3c25_15020V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.02 Archaeplastida
Pp3c5_28430V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.24 Archaeplastida
Smo266974 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.12 Archaeplastida
Solyc10g078540.3.1 No alias core component Gar1 of H/ACA small nucleolar... 0.29 Archaeplastida
Zm00001e011244_P001 No alias core component Gar1 of H/ACA small nucleolar... 0.04 Archaeplastida
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.06 Archaeplastida
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.2 LandPlants
LOC_Os11g37080.1 No alias core component Gar1 of H/ACA small nucleolar... 0.2 LandPlants
Mp5g08210.1 No alias core component Gar1 of H/ACA small nucleolar... 0.03 LandPlants
Pp3c5_28430V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.22 LandPlants
Smo266974 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.12 LandPlants
Solyc10g078540.3.1 No alias core component Gar1 of H/ACA small nucleolar... 0.29 LandPlants
Zm00001e011244_P001 No alias core component Gar1 of H/ACA small nucleolar... 0.03 LandPlants
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.06 LandPlants
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.2 SeedPlants
LOC_Os11g37080.1 No alias core component Gar1 of H/ACA small nucleolar... 0.2 SeedPlants
Solyc10g078540.3.1 No alias core component Gar1 of H/ACA small nucleolar... 0.25 SeedPlants
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.06 SeedPlants

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0006364 rRNA processing RCA Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0042991 obsolete transcription factor import into nucleus RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 50 148
No external refs found!