Zm00001e006577_P003

Description : transcription factor (ARF)

Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000516 (LandPlants) Phylogenetic Tree(s): OG_02_0000516_tree ,
OG_03_0000730 (SeedPlants) Phylogenetic Tree(s): OG_03_0000730_tree

Sequence : coding (download), protein (download)

No expression profile available

Type	Description	Actions
Neighborhood	HRR: Zm00001e006577_P003
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00221770	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
AMTR_s00029p00157690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.07	Archaeplastida
AMTR_s00155p00082980	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.07	Archaeplastida
AT1G59750	ARF1	auxin response factor 1	0.03	Archaeplastida
AT2G28350	ARF10	auxin response factor 10	0.02	Archaeplastida
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.05	Archaeplastida
AT2G46530	ARF11	auxin response factor 11	0.03	Archaeplastida
AT4G30080	ARF16	auxin response factor 16	0.02	Archaeplastida
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.06	Archaeplastida
GSVIVT01019566001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01021128001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
GSVIVT01021552001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01027166001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01032251001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01035204001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.06	Archaeplastida
GSVIVT01035205001	No alias	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Gb_25606	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_39685	No alias	transcription factor (ARF)	0.04	Archaeplastida
Gb_39686	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os01g48060.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os02g35140.1	No alias	transcription factor (ARF)	0.06	Archaeplastida
LOC_Os04g56850.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os04g57610.1	No alias	transcription factor (ARF)	0.1	Archaeplastida
LOC_Os05g43920.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os05g48870.1	No alias	transcription factor (ARF)	0.06	Archaeplastida
LOC_Os10g33940.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
LOC_Os11g32110.1	No alias	transcription factor (ARF)	0.06	Archaeplastida
LOC_Os12g29520.1	No alias	transcription factor (ARF)	0.07	Archaeplastida
LOC_Os12g41950.1	No alias	transcription factor (ARF)	0.11	Archaeplastida
MA_103763g0010	No alias	Auxin response factor 6 OS=Arabidopsis thaliana...	0.04	Archaeplastida
MA_10430707g0020	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_10432528g0010	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_122218g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_85955g0010	No alias	transcription factor (ARF)	0.04	Archaeplastida
Mp1g07070.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
Mp1g12750.1	No alias	transcription factor (ARF)	0.06	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.07	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.07	Archaeplastida
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.04	Archaeplastida
Pp3c4_13010V3.1	No alias	auxin response factor 16	0.02	Archaeplastida
Solyc01g103050.3.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Solyc03g031970.4.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Solyc03g118290.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc05g047460.3.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Solyc05g056040.3.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Solyc06g075150.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc07g016180.3.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Solyc08g082630.3.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
Solyc09g007810.4.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc11g069190.2.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e013639_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e015164_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e016366_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e041866_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
AMTR_s00029p00157690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.05	LandPlants
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.05	LandPlants
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.04	LandPlants
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	LandPlants
GSVIVT01021553001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	LandPlants
GSVIVT01035204001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	LandPlants
Gb_39685	No alias	transcription factor (ARF)	0.04	LandPlants
LOC_Os04g56850.1	No alias	transcription factor (ARF)	0.03	LandPlants
LOC_Os04g57610.1	No alias	transcription factor (ARF)	0.1	LandPlants
LOC_Os12g41950.1	No alias	transcription factor (ARF)	0.1	LandPlants
MA_122218g0010	No alias	transcription factor (ARF)	0.02	LandPlants
Mp1g12750.1	No alias	transcription factor (ARF)	0.06	LandPlants
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.05	LandPlants
Pp3c1_40270V3.1	No alias	auxin response factor 6	0.02	LandPlants
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.03	LandPlants
Smo117217	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	LandPlants
Solyc03g031970.4.1	No alias	transcription factor (ARF)	0.05	LandPlants
Zm00001e041866_P001	No alias	transcription factor (ARF)	0.03	LandPlants
AMTR_s00029p00157690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.04	SeedPlants
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.02	SeedPlants
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.02	SeedPlants
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	SeedPlants
GSVIVT01021553001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	SeedPlants
GSVIVT01035204001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	SeedPlants
Gb_39685	No alias	transcription factor (ARF)	0.04	SeedPlants
LOC_Os04g56850.1	No alias	transcription factor (ARF)	0.02	SeedPlants
LOC_Os04g57610.1	No alias	transcription factor (ARF)	0.08	SeedPlants
LOC_Os06g46410.1	No alias	transcription factor (ARF)	0.02	SeedPlants
LOC_Os12g41950.1	No alias	transcription factor (ARF)	0.1	SeedPlants
Solyc03g031970.4.1	No alias	transcription factor (ARF)	0.05	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	133	233
IPR010525	Auxin_resp	259	342

External Links

No external refs found!

Zm00001e006577_P003

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation