AT3G01480 (ATCYP38, CYP38)

Aliases : ATCYP38, CYP38

Description : cyclophilin 38

Gene families : OG_01_0004640 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004640_tree ,
OG_02_0005356 (LandPlants) Phylogenetic Tree(s): OG_02_0005356_tree ,
OG_03_0008622 (SeedPlants) Phylogenetic Tree(s): OG_03_0008622_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G01480
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00167600	evm_27.TU.AmTr_v1...	Protein modification.protein folding and quality...	0.12	Archaeplastida
Cpa\|evm.model.tig00001371.20	No alias	Protein modification.protein folding and quality...	0.01	Archaeplastida
Cre03.g189800	No alias	Protein modification.protein folding and quality...	0.03	Archaeplastida
GSVIVT01032488001	No alias	Protein modification.protein folding and quality...	0.13	Archaeplastida
Gb_08385	No alias	CYP38 protein involved in PS-II assembly. protein...	0.08	Archaeplastida
Gb_22924	No alias	CYP38 protein involved in PS-II assembly. protein...	0.03	Archaeplastida
LOC_Os08g29370.1	No alias	CYP38 protein involved in PS-II assembly. protein...	0.08	Archaeplastida
MA_7732g0010	No alias	CYP38 protein involved in PS-II assembly. protein...	0.04	Archaeplastida
MA_7887662g0010	No alias	No annotation	0.07	Archaeplastida
Mp1g20230.1	No alias	CYP38 protein involved in PS-II assembly. protein...	0.17	Archaeplastida
Pp3c15_550V3.1	No alias	cyclophilin 38	0.13	Archaeplastida
Pp3c26_630V3.1	No alias	cyclophilin 38	0.02	Archaeplastida
Solyc02g086910.4.1	No alias	no hits & (original description: none)	0.23	Archaeplastida
Zm00001e004238_P001	No alias	no hits & (original description: none)	0.16	Archaeplastida
AMTR_s00058p00167600	evm_27.TU.AmTr_v1...	Protein modification.protein folding and quality...	0.1	LandPlants
GSVIVT01032488001	No alias	Protein modification.protein folding and quality...	0.12	LandPlants
Gb_08385	No alias	CYP38 protein involved in PS-II assembly. protein...	0.06	LandPlants
Gb_22924	No alias	CYP38 protein involved in PS-II assembly. protein...	0.02	LandPlants
LOC_Os08g29370.1	No alias	CYP38 protein involved in PS-II assembly. protein...	0.08	LandPlants
MA_7732g0010	No alias	CYP38 protein involved in PS-II assembly. protein...	0.04	LandPlants
MA_7887662g0010	No alias	No annotation	0.05	LandPlants
Mp1g20230.1	No alias	CYP38 protein involved in PS-II assembly. protein...	0.16	LandPlants
Pp3c15_550V3.1	No alias	cyclophilin 38	0.12	LandPlants
Pp3c26_630V3.1	No alias	cyclophilin 38	0.02	LandPlants
Solyc02g086910.4.1	No alias	no hits & (original description: none)	0.21	LandPlants
Zm00001e004238_P001	No alias	no hits & (original description: none)	0.14	LandPlants
AMTR_s00058p00167600	evm_27.TU.AmTr_v1...	Protein modification.protein folding and quality...	0.1	SeedPlants
GSVIVT01032488001	No alias	Protein modification.protein folding and quality...	0.11	SeedPlants
Gb_08385	No alias	CYP38 protein involved in PS-II assembly. protein...	0.06	SeedPlants
Gb_22924	No alias	CYP38 protein involved in PS-II assembly. protein...	0.02	SeedPlants
LOC_Os08g29370.1	No alias	CYP38 protein involved in PS-II assembly. protein...	0.08	SeedPlants
MA_7732g0010	No alias	CYP38 protein involved in PS-II assembly. protein...	0.03	SeedPlants
Solyc02g086910.4.1	No alias	no hits & (original description: none)	0.2	SeedPlants
Zm00001e004238_P001	No alias	no hits & (original description: none)	0.13	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006098	pentose-phosphate shunt	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006457	protein folding	ISS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006633	fatty acid biosynthetic process	None	Extended
BP	GO:0006636	unsaturated fatty acid biosynthetic process	RCA	Interproscan
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006739	NADP metabolic process	None	Extended
BP	GO:0006740	NADPH regeneration	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006779	porphyrin-containing compound biosynthetic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	RCA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009543	chloroplast thylakoid lumen	IDA	Interproscan
CC	GO:0009543	chloroplast thylakoid lumen	ISS	Interproscan
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009595	detection of biotic stimulus	RCA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009657	plastid organization	RCA	Interproscan
BP	GO:0009658	chloroplast organization	None	Extended
BP	GO:0009668	plastid membrane organization	None	Extended
BP	GO:0009696	salicylic acid metabolic process	None	Extended
BP	GO:0009697	salicylic acid biosynthetic process	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009767	photosynthetic electron transport chain	None	Extended
BP	GO:0009773	photosynthetic electron transport in photosystem I	RCA	Interproscan
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009902	chloroplast relocation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010027	thylakoid membrane organization	RCA	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010103	stomatal complex morphogenesis	RCA	Interproscan
BP	GO:0010109	regulation of photosynthesis	None	Extended
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010207	photosystem II assembly	IMP	Interproscan
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0015994	chlorophyll metabolic process	None	Extended
BP	GO:0015995	chlorophyll biosynthetic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0016108	tetraterpenoid metabolic process	None	Extended
BP	GO:0016109	tetraterpenoid biosynthetic process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
BP	GO:0016116	carotenoid metabolic process	None	Extended
BP	GO:0016117	carotenoid biosynthetic process	RCA	Interproscan
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016859	cis-trans isomerase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018958	phenol-containing compound metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	RCA	Interproscan
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0019750	chloroplast localization	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031399	regulation of protein modification process	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031977	thylakoid lumen	IDA	Interproscan
CC	GO:0031978	plastid thylakoid lumen	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033014	tetrapyrrole biosynthetic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033559	unsaturated fatty acid metabolic process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0042537	benzene-containing compound metabolic process	None	Extended
BP	GO:0042548	regulation of photosynthesis, light reaction	None	Extended
BP	GO:0042549	photosystem II stabilization	IMP	Interproscan
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0042742	defense response to bacterium	IEP	Interproscan
BP	GO:0042742	defense response to bacterium	RCA	Interproscan
BP	GO:0042793	plastid transcription	RCA	Interproscan
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043467	regulation of generation of precursor metabolites and energy	None	Extended
BP	GO:0043900	regulation of multi-organism process	RCA	Interproscan
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046148	pigment biosynthetic process	None	Extended
BP	GO:0046189	phenol-containing compound biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046490	isopentenyl diphosphate metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051156	glucose 6-phosphate metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051644	plastid localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051656	establishment of organelle localization	None	Extended
BP	GO:0051667	establishment of plastid localization	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:0090626	plant epidermis morphogenesis	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002130	Cyclophilin-type_PPIase_dom	258	415

External Links

No external refs found!

AT3G01480 (ATCYP38, CYP38)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation