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  5. Zm00001e005517_P002

Zm00001e005517_P002


Description : chromatin remodeling factor (DDM1)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0005519 (LandPlants) Phylogenetic Tree(s): OG_02_0005519_tree ,
OG_03_0005694 (SeedPlants) Phylogenetic Tree(s): OG_03_0005694_tree

Sequence : coding (download), protein (download)

No expression profile available


Type Description Actions
Neighborhood HRR: Zm00001e005517_P002
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.03 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT5G18620 CHR17 chromatin remodeling factor17 0.03 Archaeplastida
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.04 Archaeplastida
Cpa|evm.model.tig00000128.11 No alias ISWI chromatin-remodeling complex ATPase CHR17... 0.01 Archaeplastida
Cpa|evm.model.tig00000863.2 No alias TATA-binding protein-associated factor BTAF1... 0.02 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cpa|evm.model.tig00020848.66 No alias Probable helicase CHR10 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.01 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g65850.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.07 Archaeplastida
MA_10437250g0010 No alias Probable helicase CHR10 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.03 Archaeplastida
Pp3c20_11500V3.1 No alias chromatin remodeling 5 0.05 Archaeplastida
Pp3c3_23680V3.1 No alias chromatin remodeling 4 0.02 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
Solyc01g090650.1.1 No alias chromatin remodeling factor (Alc) 0.03 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.03 LandPlants
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.03 LandPlants
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.05 LandPlants
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.04 LandPlants
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.05 LandPlants
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.04 LandPlants
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.06 LandPlants
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.03 LandPlants
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.04 LandPlants
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.03 LandPlants
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.03 LandPlants
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.02 SeedPlants
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.02 SeedPlants
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.05 SeedPlants
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.05 SeedPlants
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.04 SeedPlants
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.05 SeedPlants
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.03 SeedPlants
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.02 SeedPlants
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 599 711
IPR000330 SNF2_dom 283 575
No external refs found!