AT2G45660 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : AGAMOUS-like 20


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0000008 (LandPlants) Phylogenetic Tree(s): OG_02_0000008_tree ,
OG_03_0000013 (SeedPlants) Phylogenetic Tree(s): OG_03_0000013_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G45660
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
LOC_Os02g52340.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e014926_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e015924_P003 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e023825_P002 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.08 Archaeplastida
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e014926_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.04 SeedPlants
Zm00001e030839_P001 No alias transcription factor (MADS/AGL) 0.01 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000060 obsolete protein import into nucleus, translocation IDA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity TAS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
MF GO:0008134 transcription factor binding IPI Interproscan
BP GO:0009409 response to cold IEP Interproscan
BP GO:0009739 response to gibberellin IEP Interproscan
BP GO:0009908 flower development TAS Interproscan
BP GO:0009911 positive regulation of flower development IMP Interproscan
BP GO:0010048 vernalization response RCA Interproscan
BP GO:0010077 maintenance of inflorescence meristem identity IGI Interproscan
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Interproscan
BP GO:0048440 carpel development RCA Interproscan
BP GO:0048481 plant ovule development RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 84 170
No external refs found!