AT2G45190 (AFO, YAB1, FIL)

Aliases : AFO, YAB1, FIL

Description : Plant-specific transcription factor YABBY family protein

Gene families : OG_01_0000890 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000890_tree ,
OG_02_0006725 (LandPlants) Phylogenetic Tree(s): OG_02_0006725_tree ,
OG_03_0004255 (SeedPlants) Phylogenetic Tree(s): OG_03_0004255_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G45190
Cluster	HCCA: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00165390	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00047p00199030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00085p00032940	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.1	Archaeplastida
AT1G23420	INO	Plant-specific transcription factor YABBY family protein	0.06	Archaeplastida
LOC_Os02g42950.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
LOC_Os03g11600.1	No alias	transcription factor (YABBY)	0.05	Archaeplastida
LOC_Os04g45330.1	No alias	transcription factor (YABBY)	0.08	Archaeplastida
LOC_Os10g36420.1	No alias	transcription factor (YABBY)	0.12	Archaeplastida
Solyc01g010240.3.1	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Solyc01g091010.3.1	No alias	transcription factor (YABBY)	0.07	Archaeplastida
Solyc05g012050.4.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Solyc08g079100.3.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Solyc11g071810.2.1	No alias	transcription factor (YABBY)	0.03	Archaeplastida
Zm00001e000845_P005	No alias	transcription factor (YABBY)	0.03	Archaeplastida
Zm00001e003268_P003	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e007412_P003	No alias	transcription factor (YABBY)	0.06	Archaeplastida
Zm00001e012577_P001	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e015245_P002	No alias	transcription factor (YABBY)	0.03	Archaeplastida
Zm00001e017951_P002	No alias	transcription factor (YABBY)	0.03	Archaeplastida
Zm00001e032845_P002	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e038717_P002	No alias	transcription factor (YABBY)	0.03	Archaeplastida
Zm00001e041322_P001	No alias	transcription factor (YABBY)	0.07	Archaeplastida
AMTR_s00085p00032940	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.1	LandPlants
LOC_Os02g42950.1	No alias	transcription factor (YABBY)	0.03	LandPlants
LOC_Os04g45330.1	No alias	transcription factor (YABBY)	0.05	LandPlants
LOC_Os10g36420.1	No alias	transcription factor (YABBY)	0.1	LandPlants
Solyc01g091010.3.1	No alias	transcription factor (YABBY)	0.05	LandPlants
Solyc08g079100.3.1	No alias	transcription factor (YABBY)	0.04	LandPlants
Zm00001e007412_P003	No alias	transcription factor (YABBY)	0.06	LandPlants
Zm00001e012577_P001	No alias	transcription factor (YABBY)	0.04	LandPlants
Zm00001e015245_P002	No alias	transcription factor (YABBY)	0.03	LandPlants
Zm00001e041322_P001	No alias	transcription factor (YABBY)	0.07	LandPlants
AMTR_s00085p00032940	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.08	SeedPlants
LOC_Os04g45330.1	No alias	transcription factor (YABBY)	0.03	SeedPlants
LOC_Os10g36420.1	No alias	transcription factor (YABBY)	0.08	SeedPlants
Solyc01g091010.3.1	No alias	transcription factor (YABBY)	0.03	SeedPlants
Solyc08g079100.3.1	No alias	transcription factor (YABBY)	0.03	SeedPlants
Zm00001e007412_P003	No alias	transcription factor (YABBY)	0.04	SeedPlants
Zm00001e012577_P001	No alias	transcription factor (YABBY)	0.04	SeedPlants
Zm00001e015245_P002	No alias	transcription factor (YABBY)	0.01	SeedPlants
Zm00001e041322_P001	No alias	transcription factor (YABBY)	0.05	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	TAS	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006333	chromatin assembly or disassembly	RCA	Interproscan
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009668	plastid membrane organization	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
BP	GO:0009845	seed germination	RCA	Interproscan
BP	GO:0009909	regulation of flower development	IMP	Interproscan
BP	GO:0009933	meristem structural organization	IMP	Interproscan
BP	GO:0009944	polarity specification of adaxial/abaxial axis	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010027	thylakoid membrane organization	RCA	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010093	specification of floral organ identity	IMP	Interproscan
BP	GO:0010103	stomatal complex morphogenesis	RCA	Interproscan
BP	GO:0010154	fruit development	IMP	Interproscan
BP	GO:0010158	abaxial cell fate specification	IGI	Interproscan
BP	GO:0010159	specification of animal organ position	IMP	Interproscan
BP	GO:0010162	seed dormancy process	RCA	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010450	inflorescence meristem growth	IMP	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016226	iron-sulfur cluster assembly	RCA	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0031163	metallo-sulfur cluster assembly	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0035266	meristem growth	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0045165	cell fate commitment	IMP	Interproscan
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048532	anatomical structure arrangement	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090626	plant epidermis morphogenesis	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
BP	GO:0090701	specification of plant organ identity	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006780	YABBY	21	189

External Links

No external refs found!

AT2G45190 (AFO, YAB1, FIL)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation