AT2G43010 (SRL2, PIF4, AtPIF4)


Aliases : SRL2, PIF4, AtPIF4

Description : phytochrome interacting factor 4


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G43010
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00183410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.03 Archaeplastida
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.04 Archaeplastida
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.04 Archaeplastida
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.07 Archaeplastida
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.05 Archaeplastida
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.06 Archaeplastida
LOC_Os06g06900.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os07g05010.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
LOC_Os10g40740.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_88831g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
Mp3g17350.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c14_20740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c14_23520V3.1 No alias phytochrome interacting factor 3 0.03 Archaeplastida
Pp3c17_21890V3.1 No alias phytochrome interacting factor 3 0.02 Archaeplastida
Pp3c1_38820V3.1 No alias phytochrome interacting factor 3 0.04 Archaeplastida
Pp3c25_13740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Smo39143 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Solyc06g008030.3.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 Archaeplastida
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc11g005780.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e021129_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.06 LandPlants
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 LandPlants
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.04 LandPlants
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.04 LandPlants
Gb_30387 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os06g06900.1 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os07g05010.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 LandPlants
Mp3g17350.1 No alias transcription factor (bHLH) 0.02 LandPlants
Mp3g23300.1 No alias transcription factor (bHLH) 0.01 LandPlants
Pp3c1_38820V3.1 No alias phytochrome interacting factor 3 0.03 LandPlants
Smo39143 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 LandPlants
Solyc02g093280.2.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc06g008030.3.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 LandPlants
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.04 LandPlants
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 LandPlants
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 LandPlants
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.03 LandPlants
AMTR_s00024p00250370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.01 SeedPlants
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.02 SeedPlants
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.04 SeedPlants
LOC_Os07g05010.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 SeedPlants
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.01 SeedPlants
Solyc06g008030.3.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 SeedPlants
Solyc06g062460.3.1 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.03 SeedPlants

Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade RCA Interproscan
MF GO:0003677 DNA binding IDA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0006612 protein targeting to membrane RCA Interproscan
BP GO:0007623 circadian rhythm RCA Interproscan
BP GO:0009617 response to bacterium RCA Interproscan
BP GO:0009630 gravitropism RCA Interproscan
BP GO:0009704 de-etiolation IMP Interproscan
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway RCA Interproscan
BP GO:0010017 red or far-red light signaling pathway IMP Interproscan
BP GO:0010017 red or far-red light signaling pathway RCA Interproscan
BP GO:0010161 red light signaling pathway IGI Interproscan
BP GO:0010310 regulation of hydrogen peroxide metabolic process RCA Interproscan
BP GO:0010363 regulation of plant-type hypersensitive response RCA Interproscan
BP GO:0010600 regulation of auxin biosynthetic process IDA Interproscan
BP GO:0010928 regulation of auxin mediated signaling pathway IDA Interproscan
BP GO:0030003 cellular cation homeostasis RCA Interproscan
BP GO:0031348 negative regulation of defense response RCA Interproscan
BP GO:0035304 regulation of protein dephosphorylation RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011598 bHLH_dom 261 307
No external refs found!