AT2G42780


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).


Gene families : OG_01_0006605 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006605_tree ,
OG_02_0006977 (LandPlants) Phylogenetic Tree(s): OG_02_0006977_tree ,
OG_03_0008355 (SeedPlants) Phylogenetic Tree(s): OG_03_0008355_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G42780
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Solyc07g055830.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc07g055830.3.1 No alias no hits & (original description: none) 0.05 LandPlants
Solyc07g055830.3.1 No alias no hits & (original description: none) 0.05 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010684 RNA_pol_II_trans_fac_SIII_A 28 139
No external refs found!