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  5. AT2G42440

AT2G42440


Description : Lateral organ boundaries (LOB) domain family protein


Gene families : OG_01_0000938 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000938_tree ,
OG_02_0000559 (LandPlants) Phylogenetic Tree(s): OG_02_0000559_tree ,
OG_03_0000336 (SeedPlants) Phylogenetic Tree(s): OG_03_0000336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G42440
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT2G42430 LBD16, ASL18 lateral organ boundaries-domain 16 0.02 Archaeplastida
AT2G45410 LBD19 LOB domain-containing protein 19 0.06 Archaeplastida
AT3G03760 LBD20 LOB domain-containing protein 20 0.04 Archaeplastida
AT4G00220 LBD30, JLO Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
GSVIVT01027620001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
Gb_02663 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os02g57490.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
LOC_Os03g05500.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
LOC_Os03g14270.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os10g07510.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_101817g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_8060019g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_962403g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc01g091420.2.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc06g083930.2.1 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
Solyc09g066260.4.1 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Solyc09g066270.3.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Zm00001e000391_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e001031_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e042347_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e042443_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e042448_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
AT2G45410 LBD19 LOB domain-containing protein 19 0.06 LandPlants
AT3G03760 LBD20 LOB domain-containing protein 20 0.03 LandPlants
GSVIVT01027620001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 LandPlants
Gb_02663 No alias transcription factor (AS2/LOB) 0.03 LandPlants
LOC_Os02g57490.1 No alias transcription factor (AS2/LOB) 0.02 LandPlants
LOC_Os03g05500.1 No alias transcription factor (AS2/LOB) 0.05 LandPlants
LOC_Os10g07510.1 No alias transcription factor (AS2/LOB) 0.03 LandPlants
MA_101817g0010 No alias transcription factor (AS2/LOB) 0.02 LandPlants
MA_8060019g0010 No alias no hits & (original description: none) 0.03 LandPlants
Solyc01g091420.2.1 No alias transcription factor (AS2/LOB) 0.03 LandPlants
Solyc06g083930.2.1 No alias transcription factor (AS2/LOB) 0.09 LandPlants
Solyc09g066260.4.1 No alias transcription factor (AS2/LOB) 0.04 LandPlants
Solyc09g066270.3.1 No alias transcription factor (AS2/LOB) 0.04 LandPlants
AT2G45410 LBD19 LOB domain-containing protein 19 0.05 SeedPlants
LOC_Os03g05500.1 No alias transcription factor (AS2/LOB) 0.02 SeedPlants
LOC_Os03g14270.1 No alias transcription factor (AS2/LOB) 0.02 SeedPlants
MA_101817g0010 No alias transcription factor (AS2/LOB) 0.02 SeedPlants
Solyc06g083930.2.1 No alias transcription factor (AS2/LOB) 0.07 SeedPlants
Solyc09g066260.4.1 No alias transcription factor (AS2/LOB) 0.03 SeedPlants
Solyc09g066270.3.1 No alias transcription factor (AS2/LOB) 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004883 LOB 7 105
No external refs found!