GSVIVT01035108001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG_01_0000046 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000046_tree ,
OG_02_0004714 (LandPlants) Phylogenetic Tree(s): OG_02_0004714_tree ,
OG_03_0005033 (SeedPlants) Phylogenetic Tree(s): OG_03_0005033_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035108001
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
AMTR_s00007p00101250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00033p00227850 evm_27.TU.AmTr_v1... Probable pectinesterase/pectinesterase inhibitor 21... 0.05 Archaeplastida
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.07 Archaeplastida
AT1G23200 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.02 Archaeplastida
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
AT2G43050 ATPMEPCRD Plant invertase/pectin methylesterase inhibitor superfamily 0.06 Archaeplastida
AT3G05610 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G06830 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G59010 PME61 pectin methylesterase 61 0.03 Archaeplastida
AT4G15980 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT4G33230 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT5G20860 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
GSVIVT01015000001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01028264001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01037344001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
GSVIVT01037352001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
Gb_10523 No alias pectin methylesterase 0.03 Archaeplastida
Gb_28387 No alias pectin methylesterase 0.05 Archaeplastida
Gb_36012 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os01g13320.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g21034.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os02g54190.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os03g18860.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os04g38560.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os04g54850.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os07g49100.1 No alias pectin methylesterase 0.08 Archaeplastida
LOC_Os08g34910.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os09g26360.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10372207g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_648837g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_84680g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp8g00060.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp8g09330.1 No alias pectin methylesterase 0.03 Archaeplastida
Pp3c17_6440V3.1 No alias pectin methylesterase PCR fragment F 0.02 Archaeplastida
Pp3c18_22120V3.1 No alias pectin methylesterase PCR fragment F 0.04 Archaeplastida
Pp3c21_11740V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c26_2170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Smo420760 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Solyc01g057220.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g066360.3.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc01g066390.4.1 No alias Probable pectinesterase/pectinesterase inhibitor 58... 0.05 Archaeplastida
Solyc01g066420.3.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc01g099940.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc03g078090.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc07g017560.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc07g017600.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc12g099410.2.1 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e004056_P002 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e006791_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e009863_P001 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e017514_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e026790_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e034231_P001 No alias pectin methylesterase 0.06 Archaeplastida
Zm00001e035932_P003 No alias pectin methylesterase 0.08 Archaeplastida
Zm00001e041006_P001 No alias pectin methylesterase 0.07 Archaeplastida
Zm00001e041757_P001 No alias pectin methylesterase 0.04 Archaeplastida
AMTR_s00003p00239050 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.03 LandPlants
AMTR_s00003p00239050 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR031719 H2_M 755 898
IPR031737 CNDH2_C 902 1198
IPR006501 Pectinesterase_inhib_dom 46 194
IPR000070 Pectinesterase_cat 232 527
IPR009378 H2_N 567 644
No external refs found!