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  5. GSVIVT01034713001

GSVIVT01034713001


Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1)


Gene families : OG_01_0001102 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001102_tree ,
OG_02_0001721 (LandPlants) Phylogenetic Tree(s): OG_02_0001721_tree ,
OG_03_0001624 (SeedPlants) Phylogenetic Tree(s): OG_03_0001624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034713001
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AT2G36490 DML1, ROS1 demeter-like 1 0.04 Archaeplastida
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.05 Archaeplastida
LOC_Os01g11900.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.05 Archaeplastida
LOC_Os02g29380.1 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.05 Archaeplastida
LOC_Os05g37350.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 Archaeplastida
LOC_Os05g37410.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.06 Archaeplastida
Zm00001e031766_P003 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.03 Archaeplastida
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.04 LandPlants
LOC_Os01g11900.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.03 LandPlants
LOC_Os02g29380.1 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.03 LandPlants
LOC_Os05g37350.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 LandPlants
LOC_Os05g37410.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.05 LandPlants
Solyc11g007580.3.1 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.02 LandPlants
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.04 SeedPlants
LOC_Os01g11900.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.03 SeedPlants
LOC_Os05g37350.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.03 SeedPlants
LOC_Os05g37410.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.05 SeedPlants
Solyc11g007580.3.1 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.02 SeedPlants
Zm00001e024712_P001 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR028925 RRM_DME 1508 1608
IPR028924 Perm-CXXC 1474 1505
No external refs found!