GSVIVT01033726001


Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.AGO siRNA-integrating factor


Gene families : OG_01_0000124 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000124_tree ,
OG_02_0114803 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_03_0093054 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033726001
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00069070 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01012490001 No alias Protein argonaute 7 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os02g40320.1 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os03g47830.1 No alias Protein argonaute 11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os07g09020.1 No alias Protein argonaute 14 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Mp6g14610.1 No alias Protein argonaute 1A OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c17_16550V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Archaeplastida
Pp3c17_350V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Archaeplastida
Pp3c18_9600V3.1 No alias Argonaute family protein 0.02 Archaeplastida
Pp3c9_18080V3.1 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Archaeplastida
Smo109987 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
Smo98227 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
Solyc01g096750.1.1 No alias siRNA-integrating factor (AGO) 0.06 Archaeplastida
Solyc02g069280.2.1 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.03 Archaeplastida
Zm00001e002044_P002 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e011432_P001 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e017367_P001 No alias siRNA-integrating factor (AGO) 0.02 Archaeplastida
Zm00001e020428_P001 No alias Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR014811 ArgoL1 165 213
IPR003165 Piwi 502 815
IPR032474 Argonaute_N 42 152
IPR003100 PAZ_dom 238 346
IPR032472 ArgoL2 356 401
No external refs found!