GSVIVT01032162001


Description : Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0001965 (LandPlants) Phylogenetic Tree(s): OG_02_0001965_tree ,
OG_03_0003421 (SeedPlants) Phylogenetic Tree(s): OG_03_0003421_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032162001
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
AT1G62350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.18 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 Archaeplastida
Cpa|evm.model.tig00001623.10 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.01 Archaeplastida
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 Archaeplastida
GSVIVT01038096001 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.05 Archaeplastida
Gb_14850 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_18854 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.06 Archaeplastida
Gb_40303 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.05 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 Archaeplastida
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.07 Archaeplastida
LOC_Os07g36450.1 No alias THA8 plastidial RNA splicing factor 0.03 Archaeplastida
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 Archaeplastida
MA_946756g0010 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.03 Archaeplastida
Mp5g02180.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 Archaeplastida
Pp3c8_13830V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.07 Archaeplastida
Smo135826 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 Archaeplastida
Smo407937 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.03 Archaeplastida
Smo416782 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 Archaeplastida
Solyc03g120510.1.1 No alias Protein THYLAKOID ASSEMBLY 8, chloroplastic... 0.04 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 Archaeplastida
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.03 Archaeplastida
Zm00001e025825_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.08 Archaeplastida
AMTR_s00025p00175980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g48730,... 0.02 LandPlants
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.18 LandPlants
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 LandPlants
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 LandPlants
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 LandPlants
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 LandPlants
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.07 LandPlants
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 LandPlants
Mp5g02180.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.02 LandPlants
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 LandPlants
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 LandPlants
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.08 LandPlants
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 LandPlants
AMTR_s00025p00175980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g48730,... 0.02 SeedPlants
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.18 SeedPlants
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 SeedPlants
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 SeedPlants
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.02 SeedPlants
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 SeedPlants
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 SeedPlants
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 SeedPlants
Solyc08g045780.4.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 SeedPlants
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.08 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 165 209
IPR002885 Pentatricopeptide_repeat 268 316
IPR002885 Pentatricopeptide_repeat 410 455
IPR002885 Pentatricopeptide_repeat 338 387
IPR002885 Pentatricopeptide_repeat 130 159
IPR002885 Pentatricopeptide_repeat 235 264
No external refs found!