GSVIVT01032138001

Description : Cell cycle.interphase.DNA replication.preinitiation.TOP2 DNA topoisomerase

Gene families : OG_01_0003355 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003355_tree ,
OG_02_0004398 (LandPlants) Phylogenetic Tree(s): OG_02_0004398_tree ,
OG_03_0006142 (SeedPlants) Phylogenetic Tree(s): OG_03_0006142_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01032138001
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00103p00101630	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.16	Archaeplastida
AT3G23890	TOPII, ATTOPII	topoisomerase II	0.27	Archaeplastida
Cpa\|evm.model.tig00021432.55	No alias	DNA topoisomerase 2 OS=Pisum sativum	0.05	Archaeplastida
Cpa\|evm.model.tig00021433.2	No alias	DNA topoisomerase 2 OS=Arabidopsis thaliana	0.04	Archaeplastida
Cre01.g009250	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.04	Archaeplastida
Gb_11673	No alias	DNA topoisomerase (TOP2)	0.16	Archaeplastida
Gb_12824	No alias	DNA topoisomerase 2 OS=Pisum sativum (sp\|o24308\|top2_pea : 112.0)	0.17	Archaeplastida
LOC_Os02g47150.1	No alias	DNA topoisomerase (TOP2)	0.16	Archaeplastida
MA_133272g0010	No alias	DNA topoisomerase (TOP2)	0.15	Archaeplastida
MA_6634g0010	No alias	DNA topoisomerase (TOP2)	0.16	Archaeplastida
Mp3g13420.1	No alias	DNA topoisomerase (TOP2)	0.12	Archaeplastida
Pp3c18_20260V3.1	No alias	topoisomerase II	0.09	Archaeplastida
Pp3c19_3610V3.1	No alias	topoisomerase II	0.11	Archaeplastida
Smo127267	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.1	Archaeplastida
Smo98330	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.11	Archaeplastida
Solyc01g087500.3.1	No alias	DNA topoisomerase (TOP2)	0.17	Archaeplastida
Zm00001e015542_P001	No alias	DNA topoisomerase (TOP2)	0.18	Archaeplastida
Zm00001e023296_P001	No alias	DNA topoisomerase (TOP2)	0.23	Archaeplastida
AMTR_s00103p00101630	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.16	LandPlants
AT3G23890	TOPII, ATTOPII	topoisomerase II	0.29	LandPlants
Gb_11673	No alias	DNA topoisomerase (TOP2)	0.18	LandPlants
Gb_12824	No alias	DNA topoisomerase 2 OS=Pisum sativum (sp\|o24308\|top2_pea : 112.0)	0.18	LandPlants
LOC_Os02g47150.1	No alias	DNA topoisomerase (TOP2)	0.15	LandPlants
MA_133272g0010	No alias	DNA topoisomerase (TOP2)	0.18	LandPlants
MA_6634g0010	No alias	DNA topoisomerase (TOP2)	0.18	LandPlants
Mp3g13420.1	No alias	DNA topoisomerase (TOP2)	0.11	LandPlants
Pp3c18_20260V3.1	No alias	topoisomerase II	0.08	LandPlants
Pp3c19_3610V3.1	No alias	topoisomerase II	0.09	LandPlants
Smo127267	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.12	LandPlants
Smo98330	No alias	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.12	LandPlants
Solyc01g087500.3.1	No alias	DNA topoisomerase (TOP2)	0.19	LandPlants
Zm00001e015542_P001	No alias	DNA topoisomerase (TOP2)	0.21	LandPlants
Zm00001e023296_P001	No alias	DNA topoisomerase (TOP2)	0.25	LandPlants
AMTR_s00103p00101630	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.17	SeedPlants
AT3G23890	TOPII, ATTOPII	topoisomerase II	0.27	SeedPlants
Gb_11673	No alias	DNA topoisomerase (TOP2)	0.19	SeedPlants
Gb_12824	No alias	DNA topoisomerase 2 OS=Pisum sativum (sp\|o24308\|top2_pea : 112.0)	0.18	SeedPlants
LOC_Os02g47150.1	No alias	DNA topoisomerase (TOP2)	0.14	SeedPlants
MA_133272g0010	No alias	DNA topoisomerase (TOP2)	0.15	SeedPlants
MA_6634g0010	No alias	DNA topoisomerase (TOP2)	0.17	SeedPlants
Solyc01g087500.3.1	No alias	DNA topoisomerase (TOP2)	0.18	SeedPlants
Zm00001e015542_P001	No alias	DNA topoisomerase (TOP2)	0.2	SeedPlants
Zm00001e023296_P001	No alias	DNA topoisomerase (TOP2)	0.24	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	DNA-dependent ATPase activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013506	Topo_IIA_bsu_dom2	265	420
IPR031660	TOPRIM_C	566	693
IPR003594	HATPase_C	74	219
IPR002205	Topo_IIA_A/C	696	1121
IPR006171	TOPRIM_domain	452	550

External Links

No external refs found!

GSVIVT01032138001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation